Locus 15548

Sequence ID dm3.chrX
Location 19,491,712 – 19,491,816
Length 104
Max. P 0.925676
window21443 window21444

overview

Window 3

Location 19,491,712 – 19,491,816
Length 104
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 74.90
Shannon entropy 0.43227
G+C content 0.32695
Mean single sequence MFE -22.26
Consensus MFE -12.18
Energy contribution -13.50
Covariance contribution 1.32
Combinations/Pair 1.29
Mean z-score -2.06
Structure conservation index 0.55
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.32
SVM RNA-class probability 0.925676
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 19491712 104 + 22422827
AUGACAACAAAGACGUAUCGAUAAGAUGCAUGUGCAAAAUGCGGUGUGUGUAUUAACUUAAUACUUGGCCUAAGGCUUAUCGAUAAGGAUAUCGAUACUAAAAA
..............(((((((((.((((((((..(........)..))))))))..((((......((((...))))......))))..)))))))))...... ( -26.40, z-score =  -2.68, R)
>droSim1.chrX 15049565 92 + 17042790
UUGACAACAAAGAAGUAUCGAUAAGAUGCAUGUGCAAAAUGUGGUUUGUGUAUUAACUUAAUACUUGGCUUAAGGCUUAUCGAUAUUAAAAA------------
.............((((((((((((.(((....)))......((((...((((((...))))))..)))).....)))))))))))).....------------ ( -20.40, z-score =  -2.12, R)
>droSec1.super_8 1771550 92 + 3762037
UUGACAACAAAGAAGUAUCGAUAAGAUGCAUGUGCAAAAUGCGGUUUGUGUGUUAACUUAAUACUUGGCUUAAGGCUUAUCGAUACUAAAAA------------
.............((((((((((((..((((.......))))((((...((((((...))))))..)))).....)))))))))))).....------------ ( -24.30, z-score =  -3.06, R)
>droYak2.chrX 9922414 103 - 21770863
UUGACAACAAAAAAUUAUCGAUAAGUUGCAAUUGCAAAAAGCGGUGUGUGUAUCAACUUAAUGUU-GGCACAAGACUUAUCAAUUGGGAAAUCGAUACUUUAAA
...........(((.(((((((...((.((((((....((((....(((((..((((.....)))-)))))).).)))..)))))).)).))))))).)))... ( -22.00, z-score =  -1.80, R)
>droEre2.scaffold_4690 9719493 104 + 18748788
UGUAGAUCAACAAAUUAUCGAUACCCUGCAUUUGCAAAAAGUGGUGUGUGUAUUAACUAAACAUUUGGCAAAACACUUAUCAAUUUGGAAAUCGAUACUUCAAA
...............(((((((..(((((....))).(((.(((((.((((.....((((....))))....)))).))))).)))))..)))))))....... ( -18.20, z-score =  -0.66, R)
>consensus
UUGACAACAAAGAAGUAUCGAUAAGAUGCAUGUGCAAAAUGCGGUGUGUGUAUUAACUUAAUACUUGGCAUAAGGCUUAUCGAUAUGGAAAUCGAUACU__AAA
.............((((((((((((.(((....)))....(((((((..((....))...)))))..))......))))))))))))................. (-12.18 = -13.50 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 4

Location 19,491,712 – 19,491,816
Length 104
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 74.90
Shannon entropy 0.43227
G+C content 0.32695
Mean single sequence MFE -18.40
Consensus MFE -9.78
Energy contribution -10.46
Covariance contribution 0.68
Combinations/Pair 1.18
Mean z-score -1.99
Structure conservation index 0.53
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.03
SVM RNA-class probability 0.877747
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 19491712 104 - 22422827
UUUUUAGUAUCGAUAUCCUUAUCGAUAAGCCUUAGGCCAAGUAUUAAGUUAAUACACACACCGCAUUUUGCACAUGCAUCUUAUCGAUACGUCUUUGUUGUCAU
......(((((((((....))))((((((.....((....((((((...)))))).....))((((.......))))..))))))))))).............. ( -20.00, z-score =  -2.12, R)
>droSim1.chrX 15049565 92 - 17042790
------------UUUUUAAUAUCGAUAAGCCUUAAGCCAAGUAUUAAGUUAAUACACAAACCACAUUUUGCACAUGCAUCUUAUCGAUACUUCUUUGUUGUCAA
------------.......((((((((((...........((((((...)))))).............(((....))).))))))))))............... ( -15.70, z-score =  -2.65, R)
>droSec1.super_8 1771550 92 - 3762037
------------UUUUUAGUAUCGAUAAGCCUUAAGCCAAGUAUUAAGUUAACACACAAACCGCAUUUUGCACAUGCAUCUUAUCGAUACUUCUUUGUUGUCAA
------------.....((((((((((((.(((((........)))))..............((((.......))))..))))))))))))............. ( -19.40, z-score =  -3.30, R)
>droYak2.chrX 9922414 103 + 21770863
UUUAAAGUAUCGAUUUCCCAAUUGAUAAGUCUUGUGCC-AACAUUAAGUUGAUACACACACCGCUUUUUGCAAUUGCAACUUAUCGAUAAUUUUUUGUUGUCAA
.......(((((((....((((((..((((..((((.(-(((.....)))).....))))..))))....))))))......)))))))............... ( -19.40, z-score =  -1.95, R)
>droEre2.scaffold_4690 9719493 104 - 18748788
UUUGAAGUAUCGAUUUCCAAAUUGAUAAGUGUUUUGCCAAAUGUUUAGUUAAUACACACACCACUUUUUGCAAAUGCAGGGUAUCGAUAAUUUGUUGAUCUACA
...(((.(((((((.(((..(((((((((..(((....)))..))).))))))...............(((....)))))).))))))).)))........... ( -17.50, z-score =   0.04, R)
>consensus
UUU__AGUAUCGAUUUCCAUAUCGAUAAGCCUUAAGCCAAGUAUUAAGUUAAUACACACACCGCAUUUUGCACAUGCAUCUUAUCGAUACUUCUUUGUUGUCAA
....................(((((((((...........(((((.....))))).............(((....))).)))))))))................ ( -9.78 = -10.46 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:01:35 2011