| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,477,083 – 19,477,144 |
| Length | 61 |
| Max. P | 0.668443 |
| Location | 19,477,083 – 19,477,144 |
|---|---|
| Length | 61 |
| Sequences | 6 |
| Columns | 77 |
| Reading direction | reverse |
| Mean pairwise identity | 74.38 |
| Shannon entropy | 0.42619 |
| G+C content | 0.42286 |
| Mean single sequence MFE | -16.43 |
| Consensus MFE | -9.58 |
| Energy contribution | -9.58 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.668443 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19477083 61 - 22422827 ----------------UUUGCUGGAAAAUGGAAAUUCGAACGAGUUUUCACUUUCGUCUAGGUUCCCAGCCAAAAGU ----------------...(((((.....((((((((....))))))))((((......))))..)))))....... ( -15.80, z-score = -1.71, R) >droAna3.scaffold_13417 4530806 58 + 6960332 -----------------UACGUGGGAAAUGGAAAACGCAACUGAUUUUCACUUUUCACAAGAUUCCAGACCCAGU-- -----------------...(((..((.((((((.((....)).)))))).))..))).................-- ( -10.60, z-score = -0.66, R) >droEre2.scaffold_4690 9713136 77 - 18748788 UUUGUUGCGUUUGAUUUUCGGUGGGAAAUGGAAAUUGGAGCGAGUUUUCACUUUCGUCUAGGUUUCCAGCCAAAAGU ((((..((.....((((((....))))))(((((((...(((((........)))))...))))))).))))))... ( -16.60, z-score = 0.04, R) >droYak2.chrX 9909077 63 + 21770863 --------------UUUGUGGUGGGAAAUGGAAAUUGGAACGAGUUUUCACUUUCGUCUAGGUUCCAAGCCAAAAGU --------------....((((......(((((.(((((.((((........))))))))).))))).))))..... ( -15.80, z-score = -1.21, R) >droSec1.super_8 1759759 61 - 3762037 ----------------UUUGCUGAGAAAUGGAAAUUCGAACGAGUUUUCACUUUCGUCUAGGUGCCCAGCCAAAAGU ----------------...((((.(((((((((((((....))))))))).)))).....(....)))))....... ( -14.40, z-score = -1.10, R) >droSim1.chr3L 3382357 61 + 22553184 ----------------UUGGCUGGGAAAUGGAAAUUCGAACGAGUUUUCACUUUCGUCUAGGUGCCCAGCCAAAAGU ----------------(((((((((....((((((((....))))))))((((......)))).))))))))).... ( -25.40, z-score = -4.33, R) >consensus ________________UUUGCUGGGAAAUGGAAAUUCGAACGAGUUUUCACUUUCGUCUAGGUUCCCAGCCAAAAGU .......................((((.(((((((((....))))))))).)))).....(((.....)))...... ( -9.58 = -9.58 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:01:33 2011