Locus 15546

Sequence ID dm3.chrX
Location 19,472,684 – 19,472,783
Length 99
Max. P 0.807574
window21440 window21441

overview

Window 0

Location 19,472,684 – 19,472,776
Length 92
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 87.61
Shannon entropy 0.21381
G+C content 0.50335
Mean single sequence MFE -28.50
Consensus MFE -23.04
Energy contribution -22.20
Covariance contribution -0.84
Combinations/Pair 1.20
Mean z-score -1.81
Structure conservation index 0.81
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.75
SVM RNA-class probability 0.807574
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 19472684 92 - 22422827
UGGUAUUCUACUACAAUUCCCUGUGACGGAGCGCCACAGCACAGUGCAAGCCACGGAAAAGGCACGAAUUGAAUUGAAUUUGUGUCGCCCGA
(((..((((..((((......))))..))))..)))..((.....))......(((....((((((((((......))))))))))..))). ( -25.70, z-score =  -0.96, R)
>droSim1.chrX_random 5081990 92 - 5698898
UGGUUUUCCACUACAAUUCCCUGUGACGGAGCGCCACAGCACAGUGCAAGCCACGGAAAAGGCACGAAUUGAAUUGAAUUUGUGUCGCCCGA
(((((((((..((((......))))..)))((((.........))))))))))(((....((((((((((......))))))))))..))). ( -27.50, z-score =  -1.28, R)
>droSec1.super_8 1755311 92 - 3762037
UGGUUUUCCACUACAAUUCCCUGUGACUGAGCGCCACAGCACAGUGCAAGCCACGGAAAAGGCACGAAUUGAAUUGAAUUUGUGUCGCCCGA
((((((..(((...........)))((((.((......)).))))..))))))(((....((((((((((......))))))))))..))). ( -27.20, z-score =  -1.58, R)
>droYak2.chrX 9904444 85 + 21770863
UAGUUUUCCACUACAAUUCCCUGUGGCGGGGAGCUGAGCG-------AAGCCACGGAAAAGGCACGAAUUGAAUUGAAUUUGUGUCGCCCGA
(((((..((.(((((......))))).))..)))))....-------......(((....((((((((((......))))))))))..))). ( -30.80, z-score =  -2.74, R)
>droEre2.scaffold_4690 9708375 92 - 18748788
CAGUUUUCCACUACAAUUCCCUGUGGCGGGGAGCUGAGCGAAAGAGCAAGCCACAGAAAAGGCACGAAUUGAAUUGAAUUUGUGUCGCCCGA
(((((..((.(((((......))))).))..))))).((......)).............((((((((((......))))))))))...... ( -31.30, z-score =  -2.51, R)
>consensus
UGGUUUUCCACUACAAUUCCCUGUGACGGAGCGCCACAGCACAGUGCAAGCCACGGAAAAGGCACGAAUUGAAUUGAAUUUGUGUCGCCCGA
((((.((((..((((......))))..)))).)))).................(((....((((((((((......))))))))))..))). (-23.04 = -22.20 +  -0.84)

alignment

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secondary structure

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dotplot

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Window 1

Location 19,472,687 – 19,472,783
Length 96
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 87.71
Shannon entropy 0.21242
G+C content 0.47996
Mean single sequence MFE -28.56
Consensus MFE -21.06
Energy contribution -20.02
Covariance contribution -1.04
Combinations/Pair 1.23
Mean z-score -1.84
Structure conservation index 0.74
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.24
SVM RNA-class probability 0.608629
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 19472687 96 - 22422827
AACUCUUUGGUAUUCUACUACAAUUCCCUGUGACGGAGCGCCACAGCACAGUGCAAGCCACGGAAAAGGCACGAAUUGAAUUGAAUUUGUGUCGCC
...(((.((((..(((..((((......))))..)))((((.........))))..)))).)))...((((((((((......))))))))))... ( -24.70, z-score =  -0.71, R)
>droSim1.chrX_random 5081993 96 - 5698898
AACUCUUUGGUUUUCCACUACAAUUCCCUGUGACGGAGCGCCACAGCACAGUGCAAGCCACGGAAAAGGCACGAAUUGAAUUGAAUUUGUGUCGCC
...(((.(((((((((..((((......))))..)))((((.........)))))))))).)))...((((((((((......))))))))))... ( -27.20, z-score =  -1.23, R)
>droSec1.super_8 1755314 96 - 3762037
AACUCUUUGGUUUUCCACUACAAUUCCCUGUGACUGAGCGCCACAGCACAGUGCAAGCCACGGAAAAGGCACGAAUUGAAUUGAAUUUGUGUCGCC
...(((.((((((..(((...........)))((((.((......)).))))..)))))).)))...((((((((((......))))))))))... ( -26.90, z-score =  -1.45, R)
>droYak2.chrX 9904447 89 + 21770863
AACUCUUUAGUUUUCCACUACAAUUCCCUGUGGCGGGGAGCUGAGCG-------AAGCCACGGAAAAGGCACGAAUUGAAUUGAAUUUGUGUCGCC
......((((((..((.(((((......))))).))..))))))(((-------(.(((........)))(((((((......))))))).)))). ( -30.90, z-score =  -2.80, R)
>droEre2.scaffold_4690 9708378 96 - 18748788
AACUUUUCAGUUUUCCACUACAAUUCCCUGUGGCGGGGAGCUGAGCGAAAGAGCAAGCCACAGAAAAGGCACGAAUUGAAUUGAAUUUGUGUCGCC
......((((((..((.(((((......))))).))..))))))((......)).............((((((((((......))))))))))... ( -33.10, z-score =  -2.99, R)
>consensus
AACUCUUUGGUUUUCCACUACAAUUCCCUGUGACGGAGCGCCACAGCACAGUGCAAGCCACGGAAAAGGCACGAAUUGAAUUGAAUUUGUGUCGCC
.......((((.((((..((((......))))..)))).))))........................((((((((((......))))))))))... (-21.06 = -20.02 +  -1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:01:32 2011