| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,472,348 – 19,472,432 |
| Length | 84 |
| Max. P | 0.710975 |
| Location | 19,472,348 – 19,472,432 |
|---|---|
| Length | 84 |
| Sequences | 5 |
| Columns | 87 |
| Reading direction | reverse |
| Mean pairwise identity | 54.77 |
| Shannon entropy | 0.81646 |
| G+C content | 0.54718 |
| Mean single sequence MFE | -27.57 |
| Consensus MFE | -6.58 |
| Energy contribution | -8.90 |
| Covariance contribution | 2.32 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.24 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.710975 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19472348 84 - 22422827 GCGGAUAUCCGCAGACGCCCGCAAAACGCCUC-CGCAUGCACAGACAUGCAUACUCCAAUGUAUGCAUGUGUGUGUGUGUAUUUG-- ((((....))))........((.....))...-.(((((((((.((((((((((......)))))))))).))))))))).....-- ( -37.40, z-score = -4.72, R) >droSec1.super_8 1754976 86 - 3762037 GCGAAUAUCCGCAGACGCCCGCAAAACGCCUC-CGCAUGCACAGACAUGCACACUCCGAUGUAUGCGUCUGUGUGUGUGUGUAUGUG (((......))).......((((..((((...-.((((((((((((..(((.((......)).))))))))))))))))))).)))) ( -29.10, z-score = -1.21, R) >droYak2.chrX 9904109 86 + 21770863 GCGGAUAUCCGCAGACGCCCGCAAAACGCCUC-CGCAUGCACACACAUGCACACUCCGAUAUAUAUGUGUGUGUGUGUAUGAGUGUG ((((....))))..((((..((.....))...-..((((((((((((((((..............)))))))))))))))).)))). ( -32.74, z-score = -2.46, R) >dp4.chrXL_group1e 29141 63 + 12523060 ------------------GCGCGAAUGGUCAAACGCACGCCC-CCACAUCCGAGCACUUCGU-AUUCGAUGUGUGUGUGUGUG---- ------------------..............((((((((..-.((((((.(((.((...))-.))))))))).)))))))).---- ( -18.40, z-score = -0.41, R) >anoGam1.chrX 14835088 84 + 22145176 -UGCGACGCACUCCACACUCGCAACUGGUCUCGGGAUCGCCCAGCAAGUGGCAGUGCUUCCUAAUCCUAAGUGUGUUAAUACCUG-- -...((.(((((.(.((((.((...(((((....)))))....)).))))).))))).))..........((((....))))...-- ( -20.20, z-score = 0.24, R) >consensus GCGGAUAUCCGCAGACGCCCGCAAAACGCCUC_CGCAUGCACAGACAUGCACACUCCGAUGUAUGCCUAUGUGUGUGUGUGUGUG__ .................................((((((((((.(.(((((.((......)).))))).).))))))))))...... ( -6.58 = -8.90 + 2.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:01:31 2011