| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,472,053 – 19,472,138 |
| Length | 85 |
| Max. P | 0.632439 |
| Location | 19,472,053 – 19,472,138 |
|---|---|
| Length | 85 |
| Sequences | 6 |
| Columns | 88 |
| Reading direction | forward |
| Mean pairwise identity | 69.46 |
| Shannon entropy | 0.58569 |
| G+C content | 0.51244 |
| Mean single sequence MFE | -24.63 |
| Consensus MFE | -13.28 |
| Energy contribution | -13.98 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.61 |
| Mean z-score | -0.81 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.632439 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19472053 85 + 22422827 AGCUGCUUUUUGGCCAGAUUACGACAGCUGGGGUGUAAGUGGUCUAGGGCAUUUGGCAGUCGGUAUG-ACUAACGCCGUUAAGUUC-- .((((((...((.(((((((((....((....))....))))))).)).))...))))))(((..(.-....)..)))........-- ( -26.90, z-score = -1.12, R) >droSim1.chrX_random 5081356 85 + 5698898 AGCUGCUUUUUGGCCAGAUUACGACAGCUGGGUUGUAAGUGGUCUAGGGCAUUUGGCAGUCGGCAUG-ACUAACGCCGUUAGCUUC-- .((((((...((.(((((((((.(((((...)))))..))))))).)).))...))))))((((...-......))))........-- ( -29.60, z-score = -1.57, R) >droSec1.super_8 1754679 85 + 3762037 AGCUGCUUUUUGGCCAGAUUACGACAGCUGGGUUGUAAGUGGUCUAGGACAUUUGGCAGUCGGCAUG-ACUAACGCCGUUAGCUUC-- .((((((...((.(((((((((.(((((...)))))..))))))).)).))...))))))((((...-......))))........-- ( -27.10, z-score = -1.13, R) >droYak2.chrX 9903809 85 - 21770863 AGCUGCUUUUUGGCCAGAUUGCGACAGCUGGGAAGUAAGUGGUUUAGGGCAUUUGGCAGUCGCCAUG-ACUAACGCCGUUUAGUUU-- .((((((...((.((((((..(....(((....)))..)..)))).)).))...))))))......(-(((((......)))))).-- ( -23.30, z-score = 0.37, R) >droEre2.scaffold_4690 9707838 68 + 18748788 AGCUGCUUUUUGGCCAGAUUACGACAGCUG------------UUUAGGGCAUUUGGUAGUCGGCAUG-ACUAAGGCAUUUU------- ...((((((...(((.((((((.(..(((.------------.....)))...).)))))))))...-...))))))....------- ( -18.10, z-score = -0.81, R) >droAna3.scaffold_13417 4517412 84 - 6960332 AGUGCCCCCUUUGCCGAAGAGCCACUGUCUGGCUGC---CCCUCCGGAAAGUCUUG-AGCCAGCAAGUGACAACACUUGCACCUCCGA ........((((.(((.(((((((.....)))))..---..)).)))))))....(-((...(((((((....)))))))..)))... ( -22.80, z-score = -0.63, R) >consensus AGCUGCUUUUUGGCCAGAUUACGACAGCUGGGUUGUAAGUGGUCUAGGGCAUUUGGCAGUCGGCAUG_ACUAACGCCGUUAACUUC__ .((((((...((.(((((((((....((......))..))))))).)).))...))))))((((..........)))).......... (-13.28 = -13.98 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:01:30 2011