| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,460,148 – 19,460,200 |
| Length | 52 |
| Max. P | 0.957430 |
| Location | 19,460,148 – 19,460,200 |
|---|---|
| Length | 52 |
| Sequences | 3 |
| Columns | 52 |
| Reading direction | reverse |
| Mean pairwise identity | 89.68 |
| Shannon entropy | 0.14128 |
| G+C content | 0.57793 |
| Mean single sequence MFE | -19.93 |
| Consensus MFE | -16.23 |
| Energy contribution | -16.23 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.63 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.64 |
| SVM RNA-class probability | 0.957430 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19460148 52 - 22422827 UUGGACUGCGCCUGCGCUCAGCAGUGCGGUCUUACACUUACCCUUAUGGCAC ..(((((((((.(((.....)))))))))))).........((....))... ( -18.10, z-score = -1.89, R) >droSim1.chrX 15024483 51 - 17042790 UUGGACUGCGCCUGCGCUCUGCAGUGCGGUCUGCCA-UUACACUUAUGGUAC ..(((((((((.(((.....))))))))))))((((-(.......))))).. ( -21.50, z-score = -3.08, R) >droSec1.super_8 1742661 51 - 3762037 UUCGACUGCGCCUGCGCUCUGCAGUGCGGUCCGCCA-UUACACUUAUGGUAC ...((((((((.(((.....))))))))))).((((-(.......))))).. ( -20.20, z-score = -2.91, R) >consensus UUGGACUGCGCCUGCGCUCUGCAGUGCGGUCUGCCA_UUACACUUAUGGUAC ...((((((((.(((.....)))))))))))..................... (-16.23 = -16.23 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:01:28 2011