| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,447,151 – 19,447,216 |
| Length | 65 |
| Max. P | 0.520639 |
| Location | 19,447,151 – 19,447,216 |
|---|---|
| Length | 65 |
| Sequences | 4 |
| Columns | 65 |
| Reading direction | reverse |
| Mean pairwise identity | 95.13 |
| Shannon entropy | 0.07779 |
| G+C content | 0.56538 |
| Mean single sequence MFE | -21.23 |
| Consensus MFE | -18.04 |
| Energy contribution | -18.10 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.520639 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19447151 65 - 22422827 UAUUCGUCCGUUCUCGCCUGCGUUCACGCAUGGUCAGCCUUUUCGAAGGAGCAAGGACCAAGGAC .....((((...((.(((((((....)))).))).))(((((((....))).)))).....)))) ( -21.30, z-score = -1.81, R) >droSim1.chrX 15012899 65 - 17042790 UAUUCGUCCUUCCUCGCCUGCGUUCACGCAUGGUCAGCCUUUUCGAAGGAGCACGGACCAAGGAC .....(((((........((((....))))(((((..((((....))))......)))))))))) ( -19.70, z-score = -1.25, R) >droSec1.super_8 1729632 65 - 3762037 UAUUCGUCCUUCCUCGCCUGCGUUCACGCAUGGUCAGCCUUUUCGAAGGAGCACGGACCAAGGAC .....(((((........((((....))))(((((..((((....))))......)))))))))) ( -19.70, z-score = -1.25, R) >droYak2.chrX 9879688 65 + 21770863 UAUUCGUCCUUCCUCGCCUGCGUUCACGCAUGGUCAGCCUUUGCGAAGGACCAAGGAGCAAGGAC .....((((((.(((...((((....))))(((((.((....))....)))))..))).)))))) ( -24.20, z-score = -2.48, R) >consensus UAUUCGUCCUUCCUCGCCUGCGUUCACGCAUGGUCAGCCUUUUCGAAGGAGCAAGGACCAAGGAC .....((((((((..(((((((....)))).)))...((((....)))).....)))...))))) (-18.04 = -18.10 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:01:22 2011