Locus 15536

Sequence ID dm3.chrX
Location 19,445,332 – 19,445,441
Length 109
Max. P 0.998722
window21427

overview

Window 7

Location 19,445,332 – 19,445,441
Length 109
Sequences 3
Columns 113
Reading direction forward
Mean pairwise identity 89.32
Shannon entropy 0.14628
G+C content 0.34738
Mean single sequence MFE -33.01
Consensus MFE -30.03
Energy contribution -30.93
Covariance contribution 0.89
Combinations/Pair 1.06
Mean z-score -4.01
Structure conservation index 0.91
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 3.46
SVM RNA-class probability 0.998722
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 19445332 109 + 22422827
----UAUCUCUCUCAUUCGUUUAGCGAGAGGGUAUUAUGUAUUCAUAUUUGUAAUAUCAUGAUACAUAUUCUCCUUUCGCUCUACGAGUAAUGGAUAUAUCGUCAACAGUGAA
----(((((.....((((((..(((((((((((((((((((((((....)).)))).)))))))).......)))))))))..))))))...)))))................ ( -30.71, z-score =  -3.62, R)
>droSec1.super_8 1727784 111 + 3762037
CAUUUGUAUCUCUCAUUCGUGGAGCGAGAGGGUAUUAUGUAUUCAUAUUUAUAAAAUCAGGAUACAUAUUCUUCUUUGGCUUUACGAGUAAUGGAUAU--CGUCAACAGUGGA
.....((((((.(.(((((((((((.((((((...(((((((((...............)))))))))...)))))).))))))))))).).))))))--............. ( -32.76, z-score =  -3.77, R)
>droSim1.chrX 15011115 111 + 17042790
CAUUUGUAUCUGUCAUUCGUGGAGCGAGAGGGUAUUAUGUAUUCAUAUUUAUAAAAUCAGGAUACAUAUUCUUCUUUGGCUUUACGAGUAAUGGAUAU--CGUCAACAGUGGA
.....((((((((.(((((((((((.((((((...(((((((((...............)))))))))...)))))).))))))))))).))))))))--............. ( -35.56, z-score =  -4.63, R)
>consensus
CAUUUGUAUCUCUCAUUCGUGGAGCGAGAGGGUAUUAUGUAUUCAUAUUUAUAAAAUCAGGAUACAUAUUCUUCUUUGGCUUUACGAGUAAUGGAUAU__CGUCAACAGUGGA
.....(((((..(.(((((((((((.((((((...(((((((((...............)))))))))...)))))).))))))))))).)..)))))............... (-30.03 = -30.93 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:01:21 2011