| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,443,398 – 19,443,471 |
| Length | 73 |
| Max. P | 0.872653 |
| Location | 19,443,398 – 19,443,471 |
|---|---|
| Length | 73 |
| Sequences | 5 |
| Columns | 73 |
| Reading direction | reverse |
| Mean pairwise identity | 88.15 |
| Shannon entropy | 0.20410 |
| G+C content | 0.45603 |
| Mean single sequence MFE | -18.16 |
| Consensus MFE | -16.52 |
| Energy contribution | -16.52 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.872653 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19443398 73 - 22422827 CUCCUUUUUCGAUUUUUUGAGAACCCAUAUGUCUGUGUGCGCGCACAGAAAAAAGGUCCUGGCUAAGGACUCC .....(((((((....)))))))........(((((((....))))))).....((((((.....)))))).. ( -20.90, z-score = -2.15, R) >droSim1.chrX 15009131 64 - 17042790 ------UUUCGAUUUUUCGAGCACCCAUAUGUCUGUGUGCGCGCACAGAAAAAAGGUCCUGGCUAAGGAC--- ------.(((((....)))))..........(((((((....)))))))......(((((.....)))))--- ( -18.80, z-score = -1.76, R) >droSec1.super_8 1725736 64 - 3762037 ------UUUCGAUUUUUUGAGCACCCAUAUGUCUGUGUGCGCGCACAGAAAAAAGGUCCUGGCUAAGGAC--- ------......(((((((.((.(.(((((....))))).).)).)))))))...(((((.....)))))--- ( -17.00, z-score = -1.16, R) >droYak2.chrX 9876743 73 + 21770863 CUCAUUUUUCGAUUUUUUGAGAACCCAUAUGUCUGUGUGCGCGUACAGAAAAAAGGUCCUGGCUAAGGACUCU .....(((((((....)))))))........((((((......)))))).....((((((.....)))))).. ( -16.70, z-score = -0.90, R) >droEre2.scaffold_4690 9680314 71 - 18748788 --CUAUUUUCGAUUUUUUGAGAACCCAUAUGUCUGUGUGCGCGUACAGAAAAAAGGUCCUGCCUCAGGACUCU --...(((((((....)))))))........((((((......)))))).....(((((((...))))))).. ( -17.40, z-score = -1.63, R) >consensus __C__UUUUCGAUUUUUUGAGAACCCAUAUGUCUGUGUGCGCGCACAGAAAAAAGGUCCUGGCUAAGGACUC_ ......((((((....)))))).........(((((((....)))))))......(((((.....)))))... (-16.52 = -16.52 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:01:20 2011