| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,442,709 – 19,442,796 |
| Length | 87 |
| Max. P | 0.949975 |
| Location | 19,442,709 – 19,442,796 |
|---|---|
| Length | 87 |
| Sequences | 8 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 83.53 |
| Shannon entropy | 0.30842 |
| G+C content | 0.41214 |
| Mean single sequence MFE | -24.00 |
| Consensus MFE | -15.05 |
| Energy contribution | -15.10 |
| Covariance contribution | 0.05 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.53 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.56 |
| SVM RNA-class probability | 0.949975 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19442709 87 + 22422827 ----GGGAGGCAGUGAAGCAGGCUAUUAAGCAUCCAUUUAGGAUACUAAUUUGUGUAUCAUUACAAAUUGUAUCUGUGCACACACGCACAC------ ----.(((.((......))..(((....))).))).....((((((.((((((((......))))))))))))))((((......))))..------ ( -24.90, z-score = -2.64, R) >droSim1.chrX 15008421 87 + 17042790 ----GGGAGGCAGUGAAGCAGGCUAUUAAGCAUCCAUUUAGGAUACUAAUUUGUGUAUCAUUACAAAUUGUAUCUGUGCACACACGCACAC------ ----.(((.((......))..(((....))).))).....((((((.((((((((......))))))))))))))((((......))))..------ ( -24.90, z-score = -2.64, R) >droSec1.super_8 1725018 87 + 3762037 ----GGGAGGCAGUGAAGCAGGCUAUUAAGCAUCCAUUUAGGAUACUAAUUUGUGUAUCAUUACAAAUUGUAUCUGUGCACACACGCACAC------ ----.(((.((......))..(((....))).))).....((((((.((((((((......))))))))))))))((((......))))..------ ( -24.90, z-score = -2.64, R) >droEre2.scaffold_4690 9679586 87 + 18748788 ----GCGAGGCAGUGAAGCAGGCUAUUAAGCAUCCAUUUAGGAUACUAAUUUGUGUAUCAUUACAAAUUGUAUCUGUGCACACACGCACAC------ ----.....((.(((..(((.(((....))).........((((((.((((((((......)))))))))))))).)))...)))))....------ ( -21.90, z-score = -1.46, R) >droAna3.scaffold_13417 4477166 93 - 6960332 ----GCGAGGCUGUGAGGCAGGCUAUUAAGCAUCCAUUUAGGAUACUAAUUUGUGUAUCAUUACAAAUUGUAUCUACACAGGCACACGCACGCACAC ----(((...(((((.((...(((....)))..)).....((((((.((((((((......)))))))))))))).)))))((....)).))).... ( -29.60, z-score = -3.91, R) >dp4.chrXL_group1a 3792734 87 - 9151740 GAGCAUCAGGCAGUGGAGCAGGCUAUUAAGCAUCCAUUUAGGAUACUAAUUUGUGUAUCAUUACAAUUUGUAUCUGCACAGGCAGAC---------- ..((.....((((((((....(((....))).))))))..((((((.((.(((((......))))).))))))))))....))....---------- ( -22.90, z-score = -1.86, R) >droPer1.super_14 162166 87 - 2168203 GAGCAUCAGGCAGUGGAGCAGGCUAUUAAGCAUCCAUUUAGGAUACUAAUUUGUGUAUCAUUACAAUUUGUAUCCGUACAGGCAGAC---------- ..((.....((((((((....(((....))).))))))..((((((.((.(((((......))))).))))))))))....))....---------- ( -24.20, z-score = -2.83, R) >droVir3.scaffold_13042 4267665 83 - 5191987 --------AACAAGCAGUUGGGCUAUUAAGCAUCCAUUUAGGAUACUAAUUUGUGUAUCAUUACAAAUUGUAUCUGCACGCACACACACAC------ --------.....((...((((((....)))..)))....((((((.((((((((......))))))))))))))....))..........------ ( -18.70, z-score = -2.26, R) >consensus ____GGGAGGCAGUGAAGCAGGCUAUUAAGCAUCCAUUUAGGAUACUAAUUUGUGUAUCAUUACAAAUUGUAUCUGUACACACACACACAC______ .........((......))..(((....))).........((((((.((((((((......))))))))))))))...................... (-15.05 = -15.10 + 0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:01:19 2011