Locus 15530

Sequence ID dm3.chrX
Location 19,424,849 – 19,424,969
Length 120
Max. P 0.958241
window21419

overview

Window 9

Location 19,424,849 – 19,424,969
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 89.64
Shannon entropy 0.14330
G+C content 0.35627
Mean single sequence MFE -25.13
Consensus MFE -23.31
Energy contribution -22.87
Covariance contribution -0.44
Combinations/Pair 1.07
Mean z-score -2.00
Structure conservation index 0.93
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.65
SVM RNA-class probability 0.958241
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 19424849 120 - 22422827
CCAACCAAAAAAAAAAUAGAAAACAUCAGUAAUGUUAAUUAUAUUUAUCGUAUAUUUAUUGUUAACAACUCGUUGGACAGCGACUCAUUCAAGUCGAAUCCGAAUCCGAGAUGUACAAAC
......................(((((.....(((((((.(((..(((...)))..))).)))))))..((((((((...(((((......)))))..)))))...))))))))...... ( -23.20, z-score =  -2.79, R)
>droSim1.chrX 15001350 117 - 17042790
---CCGAUGGAAAACAUGGAAAACAAGAGUAAUGUUAAUUAUAUUUAUAGUAUAUUUAUUGUUAACAACUCGUUGGACAGCGACUCAGGCAAGUCGAAUCCGAAUCCGAGAUGUGCGAAC
---.(((((.....)))(((......((((..(((((((.(((..(((...)))..))).))))))))))).(((((...(((((......)))))..))))).)))........))... ( -25.30, z-score =  -1.24, R)
>droSec1.super_8 1706984 117 - 3762037
---CCAAUGGAAAACAUGGAAAACAAGAGCAAUGUUAAUUAUAUUUAUAGUAUAUUUAUUGUUAACAACUCGUUGGACAGCGACUCAGGCAAGUCGAAUCCGAAUCCGAGAUGUGCGAAC
---(((.((.....))))).........(((.(((((((.(((..(((...)))..))).))))))).(((((((((...(((((......)))))..)))))...))))...))).... ( -26.90, z-score =  -1.97, R)
>consensus
___CCAAUGGAAAACAUGGAAAACAAGAGUAAUGUUAAUUAUAUUUAUAGUAUAUUUAUUGUUAACAACUCGUUGGACAGCGACUCAGGCAAGUCGAAUCCGAAUCCGAGAUGUGCGAAC
............................(((.(((((((.(((..(((...)))..))).))))))).(((((((((...(((((......)))))..)))))...))))...))).... (-23.31 = -22.87 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:01:15 2011