| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,415,048 – 19,415,142 |
| Length | 94 |
| Max. P | 0.828534 |
| Location | 19,415,048 – 19,415,142 |
|---|---|
| Length | 94 |
| Sequences | 7 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 60.77 |
| Shannon entropy | 0.76191 |
| G+C content | 0.51793 |
| Mean single sequence MFE | -29.34 |
| Consensus MFE | -13.61 |
| Energy contribution | -15.66 |
| Covariance contribution | 2.05 |
| Combinations/Pair | 1.52 |
| Mean z-score | -0.73 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.828534 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19415048 94 + 22422827 ----------CAAAUGAUUCCCACGGCGCUGAUAAGGCCGCAAAUCAGGGCCCAAUCUCGGUAACUGAUUUUUUCCCGCCUCUCGAGUAGGGGGUGGGAUUUUC ----------.............((((.((....)))))).(((((((...((......))...)))))))..((((((((((......))))))))))..... ( -32.30, z-score = -1.18, R) >dp4.chrXL_group1a 3752138 71 - 9151740 --------------------GCAGUGCAUUGUUGAGAACAAAUGAUUAACCUUUUGGGUACUAACUGAAUUGCGCUGAUAGUUUCGUUUCC------------- --------------------.(((((((((((.....)))).......(((.....)))...........)))))))..............------------- ( -13.30, z-score = -0.25, R) >droAna3.scaffold_13417 4441676 104 - 6960332 CUGGCCUUCCGGAUUUAAUUGCACGCCGCUGAUAGGGCCUGCUUGGAGUGGCAAUCGCCGAAAUCUGAUCUUCAUAAGUGGCUGACGGUGGGUUGGAGGCGCCC ..((((((((((.....((((((.((((((.((..((.....(..((.((((....))))...))..).))..)).)))))))).))))...))))))).))). ( -35.60, z-score = 0.08, R) >droEre2.scaffold_4690 9652224 93 + 18748788 ----------UAAAUGAUUCCCACGGCGUUGAUAAGGCCACAAAUCAGGGCCCAAUCUCGGUAACUGCUUUUUU-CAGCCUUUCGACGAGGGGGUGGGAUUCUU ----------.....((.(((((((((.(((((..(....)..))))).)))...(((((......(((.....-.))).......)))))..)))))).)).. ( -29.62, z-score = -1.25, R) >droYak2.chrX 9848569 94 - 21770863 ----------UAAAUGAUUCCCACGGCGCUGAUAAGGCCACAAAUCAGGGCCCAAUCUCGGUAACUGCUUUUUUUCCGCCUCUCGAGUAGGGGGUGGGAUUCUC ----------.....((.(((((((((.(((((..(....)..))))).)))......(((..............)))(((((.....))))))))))).)).. ( -30.14, z-score = -0.97, R) >droSec1.super_8 1697367 94 + 3762037 ----------CAAAUGAUUCCCACGGCGCUGAUAAGGCCGGAAAUCAGGGCCCAAUCUCGGUAACUGCUAUUUUUCCGCCUCUCGAGGAGGGGGUGGGAUUCUC ----------.....((.(((((((((.((....)))))(((((.(((...((......))...))).....))))).((((((...)))))))))))).)).. ( -33.90, z-score = -1.01, R) >droSim1.chrX 14991757 94 + 17042790 ----------CAAAUGAUUCCCACGGCGCUGAUAAGGCCGCAAAUCAGGGCCCAAUCUCGGUAACUGCUAUUUUUCCGCCACUCGAGGAGGGGGUGGGAUUCUC ----------.....((.(((((((((.((....)))))...........(((..(((((((....((.........)).)).)))))..))))))))).)).. ( -30.50, z-score = -0.50, R) >consensus __________CAAAUGAUUCCCACGGCGCUGAUAAGGCCACAAAUCAGGGCCCAAUCUCGGUAACUGCUUUUUUUCCGCCUCUCGAGGAGGGGGUGGGAUUCUC ...............((.(((((((((.(((((..........))))).)))..........................(((((.....))))))))))).)).. (-13.61 = -15.66 + 2.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:01:14 2011