| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,397,729 – 19,397,840 |
| Length | 111 |
| Max. P | 0.555683 |
| Location | 19,397,729 – 19,397,840 |
|---|---|
| Length | 111 |
| Sequences | 4 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 91.78 |
| Shannon entropy | 0.13215 |
| G+C content | 0.57271 |
| Mean single sequence MFE | -42.83 |
| Consensus MFE | -33.72 |
| Energy contribution | -37.47 |
| Covariance contribution | 3.75 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.555683 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19397729 111 + 22422827 CCAGCUAGAUUGCGUCGGGCGGCCCUGUGGACGGAACACGUGAGGUUCGAGUUAAGGGUAAGACGACUUGUGGGGUGAACUUUGCAUUCCGCCCGGCAAUGUCAAUUCCAC ...((......))(((((((((((((...(((.((((.(....)))))..))).))))).....((..((..(((....)))..)).)))))))))).............. ( -44.00, z-score = -2.10, R) >droSim1.chrX_random 5048865 108 + 5698898 CCAGCUGGAUUGCGUCGGGCGGCCCUGUGGACGGAACACGUGAGGUUCGAGUUAAGGGUAAGAC---UUGUGGGGUGAUCUUUGCAUUCCGCCCGGCAAUGUCAAUUCCGC ...((.((((((((((((((((((((...(((.((((.(....)))))..))).)))))..((.---.((..(((....)))..)).))))))))))...).)))))).)) ( -44.60, z-score = -2.08, R) >droSec1.super_8 1680025 108 + 3762037 CCAGCUGGAUUGCGUCGGGCGGCCCUGUGGACGCAACACGUGAGGUUCGAGUUAAGGGUAAGAC---UUGUGGGGUGAUCUUUGCAUUCCGCCCGGCAAUGUCAAUGCUGC .((((..(((...(((((((((((((...(((.((((.(....)))).).))).)))))..((.---.((..(((....)))..)).))))))))))...)))...)))). ( -44.50, z-score = -1.94, R) >droEre2.scaffold_4690 9635316 106 + 18748788 CCAGC--AAUUGUGCCGGGAGGCCUUGUGGACGGAACACGUGAGGUCCGAGUUAAGGGUAAGAC---UUGUGAGGUGAACUUUGCAUUCCGCCCGGCAAUGUCAAUUCCGC ...(.--((((((((((((.(((((((....((((...(....).))))...))))).......---.((..(((....)))..))..)).)))))))....))))).).. ( -38.20, z-score = -1.34, R) >consensus CCAGCUGGAUUGCGUCGGGCGGCCCUGUGGACGGAACACGUGAGGUUCGAGUUAAGGGUAAGAC___UUGUGGGGUGAACUUUGCAUUCCGCCCGGCAAUGUCAAUUCCGC ...((......))(((((((((((((...(((.((((.(....)))))..))).))))).........((..(((....)))..))...)))))))).............. (-33.72 = -37.47 + 3.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:01:13 2011