| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,395,424 – 19,395,518 |
| Length | 94 |
| Max. P | 0.579053 |
| Location | 19,395,424 – 19,395,518 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 70.29 |
| Shannon entropy | 0.48074 |
| G+C content | 0.52245 |
| Mean single sequence MFE | -24.98 |
| Consensus MFE | -15.62 |
| Energy contribution | -16.10 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.35 |
| Mean z-score | -0.94 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.579053 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19395424 94 - 22422827 ----------UAACAACAUUUUCAGC-GGCAUGAAAGUCCGGCCGGACAGGGCCUGAUAAGACUGAUAAUGGC-------ACAUUGCAGAACGGAACGGCGACUCAACUAAA-------- ----------......((((.(((((-((.((....))))((((......))))......).)))).))))((-------.....)).........................-------- ( -19.40, z-score = 0.04, R) >droSim1.chrX_random 5047176 109 - 5698898 ----------UAACAACAUUGUCAGC-GGCACGAAAGUCCGGCCGGACAGGGCCUGAUAACACUGAUAAUGGCAGAAUGAACAUUGCAGAAUGGAACGGCGACUGAACUGAACUUCACUG ----------......(((((((((.-((.((....))))((((......))))........))))))))).(((..((((((((....))))...(((........)))...))))))) ( -28.20, z-score = -1.63, R) >droSec1.super_8 1678441 102 - 3762037 ----------UAACAACAUUGUCAGC-GGCAUGAAAGUCCGGCCGGACAGGGCCUGAUAACACUGAUAAUGGC-------ACAAUGCAGAAUGGAACGGCGACUGAACUGAACUUUCCUG ----------......(((((((((.-((.((....))))((((......))))........)))))))))((-------.....)).....(((((((........)))....)))).. ( -25.40, z-score = -0.80, R) >droYak2.chrX 9830043 85 + 21770863 ----------UAACAACAUUGUCAGC-GGCAUGAAAGUCCGGCCGGACAGGGCCUGAUAAGACUGAUAAUGGC-------ACAUUGCAGAAUGGAACGGCGAC----------------- ----------......((((((((((-((.((....))))((((......))))......).)))))))))((-------.((((....)))).....))...----------------- ( -24.50, z-score = -1.83, R) >droEre2.scaffold_4690 9633706 85 - 18748788 ----------UAACAACAUUUUCAGC-GACAUGAAAGUCCGGCCGGACAGGGCCUGAUAAGGCUGAUAAUGGC-------ACAUUGCAGAAUGGAACGGCGAC----------------- ----------......((((.(((((-(((......))).((((......)))).......))))).))))((-------.((((....)))).....))...----------------- ( -23.50, z-score = -1.89, R) >droAna3.scaffold_13417 4413793 91 + 6960332 CAACCGCAAUUAUCGUCGCCGUCGACAGGAAUGGUCGGGUGGCCGGGCAGGCCCUGAUAAGAC--ACGGCCGC-------CGAGGGAAGAACGCAAUAGC-------------------- .....((.(((..(((..((.(((((.......))).((((((((((....)))((......)--).))))))-------))).))....))).))).))-------------------- ( -28.90, z-score = 0.44, R) >consensus __________UAACAACAUUGUCAGC_GGCAUGAAAGUCCGGCCGGACAGGGCCUGAUAAGACUGAUAAUGGC_______ACAUUGCAGAAUGGAACGGCGAC_________________ ................(((((((((..((.((....))))((((......))))........)))))))))................................................. (-15.62 = -16.10 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:01:08 2011