| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,378,383 – 19,378,483 |
| Length | 100 |
| Max. P | 0.647595 |
| Location | 19,378,383 – 19,378,483 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 60.99 |
| Shannon entropy | 0.65102 |
| G+C content | 0.50752 |
| Mean single sequence MFE | -26.22 |
| Consensus MFE | -12.64 |
| Energy contribution | -9.36 |
| Covariance contribution | -3.28 |
| Combinations/Pair | 1.73 |
| Mean z-score | -0.80 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.647595 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19378383 100 + 22422827 AAUGGUUUCGGACGAGGACGAGUCGAUGAGGAAUAGGAAUAGGAAUCCGGUACGAAAUGGUGCGGAGGUGAUAUGUGGGAUUCGCACGUCGAACGUUCGU ...............(((((..((((((.(((((....(((...((((.((((......)))).).)))..))).....)))).).)))))).))))).. ( -24.90, z-score = 0.20, R) >droPer1.super_14 2100953 91 + 2168203 ACCCGACUCA-CAGACAGCAAGUGUUUUAGCAAC---AAUAUAGAACAACUGCG---UGCUGGCGGAAAGAUAUGCGGGUGUCGUAUAUCUCUUCCUG-- ..........-(((...(((..(((((((.....---....)))))))..))).---..)))..(((((((((((((.....))))))))).))))..-- ( -28.10, z-score = -2.23, R) >dp4.chrXL_group1a 5474420 93 + 9151740 ACCCGACUCA-CAGACAGCAAGUGUUUUAGCAAC---AAUAUAGAACAACUGCAAC-UGCUGGCGGAAAGAUAUGCGGGUGUCGUAUAUCUCUUCCUG-- ..........-(((.(((((..(((((((.....---....)))))))..)))...-)))))..(((((((((((((.....))))))))).))))..-- ( -25.90, z-score = -1.83, R) >droEre2.scaffold_4690 9617541 88 + 18748788 AAUGGUUUCGGCCGAGGACAAGUCGAUGAGGAAU------------CCGAUGUAAAAUGGUGCGAAGGUGACAUGUGGGAGUCGCACGUCGAAUGUUCGG ..((((....)))).(((((..((((((.(((.(------------((.((.....(((..((....))..))))).))).)).).)))))).))))).. ( -25.40, z-score = -0.65, R) >droSim1.chrU 14079126 100 + 15797150 AAUGGUUUCGGCCGAGGACGAGUCGAUGAGGAAUAGGAAUAGGAAUCCGGUGCGAAAUGGUGCGGAGGUGAUAUGUGGGAUGCGCACGUCGGACGUCCGG ..((((....)))).(((((..((((((.................(((.(..(......)..)))).......((((.....)))))))))).))))).. ( -26.80, z-score = 0.50, R) >consensus AAUGGUUUCGGCCGAGGACAAGUCGAUGAGGAAU___AAUAGAAAACCGCUGCGAAAUGGUGCGGAGGUGAUAUGUGGGAGUCGCACGUCGAAUGUUCG_ ...............(((((..((......))....................................((((.((((.....)))).))))..))))).. (-12.64 = -9.36 + -3.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:01:04 2011