| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,367,014 – 19,367,139 |
| Length | 125 |
| Max. P | 0.553169 |
| Location | 19,367,014 – 19,367,139 |
|---|---|
| Length | 125 |
| Sequences | 4 |
| Columns | 133 |
| Reading direction | reverse |
| Mean pairwise identity | 69.08 |
| Shannon entropy | 0.49856 |
| G+C content | 0.38437 |
| Mean single sequence MFE | -27.30 |
| Consensus MFE | -13.35 |
| Energy contribution | -14.35 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.553169 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19367014 125 - 22422827 CCUCGGCUGAUUCGUUACAUAAUGCAUUGCCUACUUAAGUGGGACAACGCAAGCAAUCAAAUGC-------UUUGAAAU-GCGUUGUGAUUUUCAAAUAAAUAUCCAUUAAAUGCCUCGGAAAACAGUAGACA ..((.((((........(((((((((((.(((((....)))))....((.(((((......)))-------)))).)))-))))))))...............(((............)))...)))).)).. ( -29.30, z-score = -1.43, R) >droSim1.chrX_random 5029665 125 - 5698898 CCUCGGCUGAUUCGUUACAUAAUGCAUUGCCUACUUAAGUGGGCCAACGCAAGCAAUCAAAUGC-------UUUCAAAU-GCGUUGUGAUUUUCAAAUAAAUAUCCAUUAAGUGCCUCAGAAAACAGUAGACA ..((.((((........(((((((((((((((((....))))))....(.(((((......)))-------)).).)))-)))))))).(((((.........................))))))))).)).. ( -30.91, z-score = -2.00, R) >droSec1.super_2467 7 109 - 5057 CCUCGGCUGAUUCGUUACAUAAUGCAUUGCCUACUUAAGUGGGCCAAAGCAUGCAAUCAAAUGC-------UUUCAAAUAGCGUUUUGA-UUUCAAAUAAAUAUCCAACAGUAGACA---------------- ..((.((((............((((.((((((((....))))).))).))))(.((((((((((-------(.......)))).)))))-)).)..............)))).))..---------------- ( -26.70, z-score = -2.32, R) >droEre2.scaffold_4690 9606182 109 - 18748788 ---------------------AUACAUUGCGUGCUUAAGUGCGCCAGGACAAGCAAUCAAAGGCGAGUAUGUUCUGAAAUGCGUUGUGUGUUUCAAACAAAUAUCCAUUAAAUGCCUUAAAAAGUAGACA--- ---------------------.(((...(((..(....)..)))...............((((((..((((((.((((((((.....)))))))))))).........))..)))))).....)))....--- ( -22.30, z-score = 0.28, R) >consensus CCUCGGCUGAUUCGUUACAUAAUGCAUUGCCUACUUAAGUGGGCCAACGCAAGCAAUCAAAUGC_______UUUCAAAU_GCGUUGUGAUUUUCAAAUAAAUAUCCAUUAAAUGCCUCAGAAAACAGUAG___ .................((((((((.((((((((....))))).))).....(((......)))................))))))))............................................. (-13.35 = -14.35 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:01:03 2011