Locus 15520

Sequence ID dm3.chrX
Location 19,355,258 – 19,355,349
Length 91
Max. P 0.670885
window21403

overview

Window 3

Location 19,355,258 – 19,355,349
Length 91
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 58.61
Shannon entropy 0.54322
G+C content 0.40556
Mean single sequence MFE -23.43
Consensus MFE -13.88
Energy contribution -11.90
Covariance contribution -1.98
Combinations/Pair 1.44
Mean z-score -0.87
Structure conservation index 0.59
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.39
SVM RNA-class probability 0.670885
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 19355258 91 + 22422827
----------------------------AAAAAUGUAUGCAUAUAG-AAUGGCGGUGCGCUUCGUCACUAUGUGAACAGCUGUUUGUCGCUAUUCUAGCAAAUUCAGCAUUAUGCUUAUA
----------------------------.....((((.((((((((-((((((((.(((((...((((...))))..))).))...)))))))))))((.......))..))))).)))) ( -27.30, z-score =  -2.23, R)
>droEre2.scaffold_4690 9595240 120 + 18748788
AAAUAUCUUAAUAUUUCUUAUUUGCGAUUGUAGACUACGUUUAACGCUCUACCGGUGCGCUUCGUCACUACGUGGACUGCCGUUCGCUGGUGUUAUAGUAAAUUCAGUAUUAUGCUAAUA
........(((((((........(((...(((((...((.....)).)))))...)))(((....(((((.((((((....)))))))))))....)))......)))))))........ ( -24.30, z-score =   0.14, R)
>droSec1.super_8 1638970 78 + 3762037
-----------------------------------------UAAUG-UAUGGCGGUGCGCUUCGUCACUAUGUGAACCGCUGUUCGUCGCUAUUCUAGCAAACUCAGCUUUAUGCUUAUA
-----------------------------------------..(((-.((((((((.(((...........))).)))))))).))).((((...))))......(((.....))).... ( -18.70, z-score =  -0.51, R)
>consensus
_______________________________A___UA_G__UAAAG_UAUGGCGGUGCGCUUCGUCACUAUGUGAACAGCUGUUCGUCGCUAUUCUAGCAAAUUCAGCAUUAUGCUUAUA
.................................................((((((((.((..(.((((...))))...)..)).)))))))).............(((.....))).... (-13.88 = -11.90 +  -1.98)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:01:02 2011