| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,354,290 – 19,354,381 |
| Length | 91 |
| Max. P | 0.653525 |
| Location | 19,354,290 – 19,354,381 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 68.60 |
| Shannon entropy | 0.54784 |
| G+C content | 0.40895 |
| Mean single sequence MFE | -17.16 |
| Consensus MFE | -9.70 |
| Energy contribution | -8.10 |
| Covariance contribution | -1.60 |
| Combinations/Pair | 1.62 |
| Mean z-score | -0.90 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.653525 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19354290 91 - 22422827 ---AAAGUAACAGUAGCAAUCGCAAUAGCAAUGUCUAUUUCAAGGGUUUUC-AUCGCCCAGACCACCAAAGCUACGCUCCUUUGCGUUUUUUUUA ---((((.(((.(((((....((....))...((((.......((((....-...)))))))).......)))))((......))))).)))).. ( -18.01, z-score = -1.77, R) >droEre2.scaffold_4690 9594233 89 - 18748788 ---AAAGUAACAGUGGCAGUAGCAAUAGCAAUGUCCACAUCAAGGGUUUUUAACCACCCAGCC--CCAAAGCUCCGCUCCUUUGCGUAUUUUUA- ---.........((((((...((....))..)).)))).....((((........))))(((.--.....))).(((......)))........- ( -18.10, z-score = -0.94, R) >droSim1.chrX 14971303 88 - 17042790 ---AAAGUAACAGUAGCAAUAGCAAUAGCAAUGUCUAUUUCAAGGGUUUUC-ACCACCCAGAC--CCAAAGCCUCGCUCCCUUGCGUAUUUUUA- ---...((((..(.((((((((((.......)).)))))....((((((..-.......))))--))........))))..)))).........- ( -13.90, z-score = -0.64, R) >droSec1.super_8 1637990 88 - 3762037 ---AAAGUAACAGUAGCAAUAGCAAUAGCAAUGUCUAUUUCAAGGGUUUUC-ACCGCCCAGAC--CCAAAGCCUCGCUCCUUUGCGUAUUAUUA- ---...((((.((.((((((((((.......)).)))))....((((((..-.......))))--))........))).)))))).........- ( -15.00, z-score = -0.59, R) >droWil1.scaffold_180772 8049017 92 - 8906247 GGUAUAGAGAUGGGAAUUCCAUUGAUGGCAUUAUGUAUAUUAUCGAUAUAU-UUCAUCGCUUUUAUC-GAGUGGCGUUACUAUCGAUAUAUUCC- ((((((..(((((.(((.(((((((((((.....(((((((...)))))))-......)))...)))-.))))).))).)))))..))))))..- ( -20.80, z-score = -0.57, R) >consensus ___AAAGUAACAGUAGCAAUAGCAAUAGCAAUGUCUAUUUCAAGGGUUUUC_ACCACCCAGAC__CCAAAGCCUCGCUCCUUUGCGUAUUUUUA_ .....................((((.(((..((.......)).((((........))))................)))...)))).......... ( -9.70 = -8.10 + -1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:01:01 2011