Locus 15517

Sequence ID dm3.chrX
Location 19,352,471 – 19,352,580
Length 109
Max. P 0.667993
window21395

overview

Window 5

Location 19,352,471 – 19,352,580
Length 109
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 76.50
Shannon entropy 0.32067
G+C content 0.39035
Mean single sequence MFE -25.62
Consensus MFE -21.09
Energy contribution -19.33
Covariance contribution -1.76
Combinations/Pair 1.35
Mean z-score -1.16
Structure conservation index 0.82
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.38
SVM RNA-class probability 0.667993
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 19352471 109 - 22422827
CAAUUUGUGUGCUCU--AAACUGGGCGGGGUGUUUGCAGGAUGUUUUUGGUUUACCAGUUGGUUGGCAAGGAAAACAAUAAAAUGUCGGAUCAGAAACGCAUUCAAAUAAA---------
..(((((.((((...--...((..((((.....)))).))..(((((((((((..((....((((..........))))....))..))))))))))))))).)))))...--------- ( -24.80, z-score =  -0.39, R)
>droSim1.chrX 14969424 118 - 17042790
UAAUUUUUGGGCUCUAAAAAGUGGGCGGGGUGUUUG--AAAUGUUUUUGGUUUACCAGUUGGUUGGCAAGAAAAACAAUAAAAUGCCGGAUCAGAAACGCAUUCAGCAAAUCAAGGAUAC
..((((((((((((........))))....((((.(--((.(((((((((((((((....))).((((...............))))))))))))))))..)))))))..)))))))).. ( -28.66, z-score =  -1.48, R)
>droSec1.super_8 1636068 98 - 3762037
UAAUUUGUGGGCUCUAAAAAGUGGGCGGGGUGUUUG--AAAUGUUUUUGGUUUACCAGUUGGUUGGCAAGAAAAACAAUAAAAUGCCAAAUCAAGGAUAC--------------------
..(((..(((((((........))))..(((((((.--...(((((((.((..(((....)))..))...)))))))...)))))))...)))..)))..-------------------- ( -23.40, z-score =  -1.60, R)
>consensus
UAAUUUGUGGGCUCUAAAAAGUGGGCGGGGUGUUUG__AAAUGUUUUUGGUUUACCAGUUGGUUGGCAAGAAAAACAAUAAAAUGCCGGAUCAGAAACGCAUUCA___AA__________
..........((((........))))...............(((((((((((((((....))).((((...............))))))))))))))))..................... (-21.09 = -19.33 +  -1.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:00:56 2011