| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,339,603 – 19,339,705 |
| Length | 102 |
| Max. P | 0.515787 |
| Location | 19,339,603 – 19,339,705 |
|---|---|
| Length | 102 |
| Sequences | 4 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 83.54 |
| Shannon entropy | 0.25247 |
| G+C content | 0.51356 |
| Mean single sequence MFE | -34.50 |
| Consensus MFE | -25.31 |
| Energy contribution | -25.75 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.515787 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19339603 102 + 22422827 ------------UGGGGAAAGCGGGAAAUGCGAAGGAUUUGGUUAACGAAUCCAUGCCCUGCUGUGGGCGAUAAUCUCGAGGGGGGUUUGGUAACCACUGCUAAAUUAUUGCCG ------------.......((((((....(((..(((((((.....))))))).)))))))))...(((((((((....((.((((((....)))).)).))..))))))))). ( -36.50, z-score = -2.41, R) >droEre2.scaffold_4690 9580791 113 + 18748788 UGGGAAAAGCAAAGCGGAGAAUUGGGAAAGCGGAGGAUUUGGGUAACGAAUCCAUGCCCUGCUCUGGGCGAUAAUCUCG-AGGGGGUUGGGUAACCACUGCUAAAUUAUUGCUG .......((((((((((....((((((.......(((((((.....))))))).(((((......)))))....)))))-)...((((....)))).)))))......))))). ( -35.30, z-score = -1.44, R) >droSec1.super_8 1623955 100 + 3762037 ------------UGGGAAAAGCUGGCAA-GCGGGGGAUUUGGGUAACGAAUCCAUUCCCUGCUCUGGGCGAUAAUCUCG-GGGGAUUUUGGUAACCACUGCUAAAUUAUUGCUG ------------.(((((..(((....)-))...(((((((.....))))))).))))).......(((((((((((..-..))).(((((((.....))))))))))))))). ( -31.70, z-score = -1.24, R) >droSim1.chrX 14957189 100 + 17042790 ------------UGGGAAAAGCGGGCAA-GCGGGGGAUUUGGGUAACGAAUCCAUGCCCUGCUCUGGGCGAUAAUCUCG-GGGGGUUUCGGUAACCACUGCUAAAUUAUUGCUG ------------.......((((((...-(((..(((((((.....))))))).)))))))))...(((((((((...(-.((((((.....)))).)).)...))))))))). ( -34.50, z-score = -1.36, R) >consensus ____________UGGGAAAAGCGGGCAA_GCGGAGGAUUUGGGUAACGAAUCCAUGCCCUGCUCUGGGCGAUAAUCUCG_GGGGGGUUUGGUAACCACUGCUAAAUUAUUGCUG ...................((((((....(((..(((((((.....))))))).)))))))))...(((((((((.....((((..........)).)).....))))))))). (-25.31 = -25.75 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:00:52 2011