| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,327,343 – 19,327,433 |
| Length | 90 |
| Max. P | 0.749424 |
| Location | 19,327,343 – 19,327,433 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 72.49 |
| Shannon entropy | 0.40710 |
| G+C content | 0.35876 |
| Mean single sequence MFE | -21.92 |
| Consensus MFE | -11.93 |
| Energy contribution | -12.68 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.749424 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19327343 90 + 22422827 AAAAUAAGUGUGCUAAUUAACUUUAAAUUAGGUUAGUUAU---UGGAAAAUC-----------AGGGCCAUUUACUCCUAAUAUUUGUAUUGGUCGGUGGGCAA .......((.(((((((((((((......)))))))))..---.........-----------..(((((..(((...........))).))))))))).)).. ( -18.10, z-score = -0.73, R) >droSim1.chrX 14952625 75 + 17042790 -AAAUAGGUGUGCUAAUUAACUUUAAAUUAGGUUAGUUGG---UGGAC----------------------UCCACUCCAAAUAUUUGUAUUG-CCGGUGGGC-- -.....(((.(((((((((((((......)))))))))))---)).))----------------------)(((((...((((....)))).-..)))))..-- ( -22.40, z-score = -2.54, R) >droSec1.super_8 1619425 77 + 3762037 -AAAUAGGUGUGCUAAUUAACUUUAAAUUAGGUUAGUUGG---UGGAC----------------------UCCACUCCAAAUAUUUGUAUUG-CCGGUGGGCAA -..((((((((((((((((((((......)))))))))))---)(((.----------------------.....)))..)))))))).(((-((....))))) ( -22.80, z-score = -2.41, R) >droYak2.chrX 9770642 103 - 21770863 -AACUAAGUGUGCUUAUUAACUUUCAAUUAAGUUAGUUGUGGGUGGAAAAUAUUUCACUUCAGGGGUAAAUCCAAUCGAAAUAUUUGUAUUUCCCGCUGGGCAA -.........(((((((((((((......)))))))..(((((....(((((((((......(((.....)))....)))))))))......))))))))))). ( -24.40, z-score = -1.71, R) >consensus _AAAUAAGUGUGCUAAUUAACUUUAAAUUAGGUUAGUUGG___UGGAA______________________UCCACUCCAAAUAUUUGUAUUG_CCGGUGGGCAA ..........(((((((((((((......))))))))))................................(((((.((((((....))))))..)))))))). (-11.93 = -12.68 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:00:49 2011