| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,327,028 – 19,327,137 |
| Length | 109 |
| Max. P | 0.602102 |
| Location | 19,327,028 – 19,327,137 |
|---|---|
| Length | 109 |
| Sequences | 4 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 74.14 |
| Shannon entropy | 0.42576 |
| G+C content | 0.45729 |
| Mean single sequence MFE | -25.78 |
| Consensus MFE | -19.06 |
| Energy contribution | -19.00 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.17 |
| Mean z-score | -0.89 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.602102 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19327028 109 - 22422827 UGUACACACACACAGAUACAGAUACCUUAAUUUAAUUCUAAUUAGCCCC-UUCACGGUUGAGCCAAG----UGUCGCUCGCACGUGAAGUGAAAACAACCAGUCGAAUUGGGCG .............(((...((((......))))...))).....((((.-((((((..(((((....----....)))))..))))))((....)).............)))). ( -24.10, z-score = -0.89, R) >droSim1.chrX 14952330 95 - 17042790 -------------ACA---GGAUACCCAAAUUUAAUUCUAAUUAGCCCC-UUCACGGUUGAGCCAAGUG--UCGCGCUCGCACGUGAAGUGAAAACAAGCAGUCGAAUUGGGCG -------------...---((....)).................((((.-((((((..((((((.....--..).)))))..))))))((....)).............)))). ( -24.60, z-score = -0.95, R) >droYak2.chrX 9770339 108 + 21770863 --UGUUUUCACCCAUA----GAUACUUAAAUUUAAUUAUAAUUAGCCUCGUUCACGGCGGAGCCAAGUGACUGACGCUCGCACGUGAAGUGAAAACAAGCCGUUGAAUUGGGCG --(((((((((...((----(((......)))))................(((((((((.(((..((...))...)))))).))))))))))))))).(((.........))). ( -28.60, z-score = -1.49, R) >droEre2.scaffold_4690 9576046 102 - 18748788 UGUACA---GUGCAGAUUAAAGUA----AAUUUAAUUCUAAUUAGCCCC-UUCACGGUUGGGCCAAG----UGUCGCUGGCACAUGAAGUGCGAACAACCAGUCGAAUUGGGCA .....(---((...(((((((...----..)))))))...))).((((.-(((((((((((((....----....))).((((.....))))...))))).)).)))..)))). ( -25.80, z-score = -0.22, R) >consensus __UACA___AC_CAGA___AGAUACCUAAAUUUAAUUCUAAUUAGCCCC_UUCACGGUUGAGCCAAG____UGUCGCUCGCACGUGAAGUGAAAACAACCAGUCGAAUUGGGCG ............................................((((..((((((((.((((............)))))).))))))((....)).............)))). (-19.06 = -19.00 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:00:49 2011