| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,006,267 – 12,006,359 |
| Length | 92 |
| Max. P | 0.857546 |
| Location | 12,006,267 – 12,006,359 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 84.87 |
| Shannon entropy | 0.25840 |
| G+C content | 0.46281 |
| Mean single sequence MFE | -16.94 |
| Consensus MFE | -9.80 |
| Energy contribution | -10.20 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.62 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.857546 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12006267 92 + 23011544 CAUAUAUGAGCUGCUUAAGUCAUCGACAGUCGAGCAAAAACCCCAAAUAUAU-UUAUGUGUCUCCCCCACACUCC--CCUGUUCGACAGCAAAAG .........(((......(((...))).((((((((..........(((...-.)))((((.......))))...--..)))))))))))..... ( -16.70, z-score = -2.92, R) >droSim1.chr2L 11810379 93 + 22036055 CAUAUAUGAGCUGCUUAUGUCAUCGACAGUCGAGCAAAAACCCCAAAUAUAUGUUAUGUGUCUCCCCCACACUCC--CCUGUUCGACAGCAAAAG .........(((.....((((...))))((((((((..........(((.....)))((((.......))))...--..)))))))))))..... ( -17.50, z-score = -2.53, R) >droSec1.super_16 201794 82 + 1878335 CAUAUAUGAGCUGCUUAUGUC----------GAGCAAAAACCCCAAAUAUAU-UUAUGUGUCUCCCCCACACUCC--CCUGUUCGACAGCAAAAG ...........((((...(((----------(((((..........(((...-.)))((((.......))))...--..)))))))))))).... ( -15.00, z-score = -3.25, R) >droYak2.chr2L 8425206 94 + 22324452 CAUAUAUGAGCUGCUUAUGUCAUCGGCAGUCGAGCAAAAGCCGCCAAUAUAU-UUAUGUGCCCCCCACAUUCCCCUCCCUGCUCGUCAGCAAAAG .((((((..((.((((.(((..(((.....)))))).)))).))..))))))-..(((((.....))))).........((((....)))).... ( -18.70, z-score = -1.35, R) >droEre2.scaffold_4929 13233103 90 - 26641161 CAUAUAUGAGCUGCUUAUGUCAUCGACAGUCGAGCAAAAACCCCCAAUAUAU-UUAUGUGCCCCCCACAUUGC----CCUGCUCGUCCCCAAAAG .....(((((((((((.((((...))))...)))))................-..(((((.....)))))...----...))))))......... ( -16.80, z-score = -3.04, R) >consensus CAUAUAUGAGCUGCUUAUGUCAUCGACAGUCGAGCAAAAACCCCAAAUAUAU_UUAUGUGUCUCCCCCACACUCC__CCUGUUCGACAGCAAAAG ......((((((((((.((((...))))...))))).....................(((.......)))..........))))).......... ( -9.80 = -10.20 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:34:10 2011