| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,322,713 – 19,322,771 |
| Length | 58 |
| Max. P | 0.631360 |
| Location | 19,322,713 – 19,322,771 |
|---|---|
| Length | 58 |
| Sequences | 5 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 96.69 |
| Shannon entropy | 0.06098 |
| G+C content | 0.39642 |
| Mean single sequence MFE | -4.50 |
| Consensus MFE | -4.50 |
| Energy contribution | -4.50 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.86 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.631360 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19322713 58 + 22422827 AUAUACAAAACCAAAGGCAAAGCCUCAAAAACCGACCCAAGUCUCCAAUGAAUACGUU ..............((((...))))........(((....)))............... ( -4.50, z-score = -0.74, R) >droEre2.scaffold_4690 9571849 56 + 18748788 AUAUACAAA-CCAAAGGCAAAGCCUCAAAA-CCGACCCAAGUCUCCAAUGAAUAAAUU .........-....((((...)))).....-..(((....)))............... ( -4.50, z-score = -1.25, R) >droYak2.chrX 9765830 57 - 21770863 AUAUACAAA-CCAAAGGCAAAGCCUCAAAAACCGACCCAAGUCUCCAAUGAAUACCUU .........-....((((...))))........(((....)))............... ( -4.50, z-score = -1.00, R) >droSec1.super_8 1614794 57 + 3762037 AUAUACAAA-CCAAAGGCAAAGCCUCAAAAACCGACCCAAGUCUCCAAUGAAUACGUU .........-....((((...))))........(((....)))............... ( -4.50, z-score = -0.65, R) >droSim1.chrX 14944939 57 + 17042790 AUAUACAAA-CCAAAGGCAAAGCCUCAAAAACCGACCCAAGUCUCCAAUGAAUACGUU .........-....((((...))))........(((....)))............... ( -4.50, z-score = -0.65, R) >consensus AUAUACAAA_CCAAAGGCAAAGCCUCAAAAACCGACCCAAGUCUCCAAUGAAUACGUU ..............((((...))))........(((....)))............... ( -4.50 = -4.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:00:48 2011