Locus 15508

Sequence ID dm3.chrX
Location 19,319,893 – 19,320,013
Length 120
Max. P 0.912562
window21383

overview

Window 3

Location 19,319,893 – 19,320,013
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 79.17
Shannon entropy 0.28870
G+C content 0.49389
Mean single sequence MFE -36.90
Consensus MFE -26.59
Energy contribution -28.16
Covariance contribution 1.57
Combinations/Pair 1.16
Mean z-score -2.12
Structure conservation index 0.72
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.23
SVM RNA-class probability 0.912562
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 19319893 120 + 22422827
UUCGAGUGCUCACAAUGGGAUACUCCUUUUACUUUGCAACGAAGGAUGGCGAAAGUCAACUCCGAUGAAAUUUGGCCAAACGAAGUGUGUUUUUGGCCAGCUCAACACAAGCGGCCAGAC
...((((((((.....))).)))))....(((((((.......((.((((....)))).))((((......)))).....)))))))....(((((((.(((.......)))))))))). ( -34.20, z-score =  -1.15, R)
>droSim1.chrX 14942157 120 + 17042790
UUCGAGUGCUCACAAUGGGGUACUCCUUUUACUUUGGAACGGAGGACGGCGAAAGUCAACUCCGAUGGAAUUUGGCCAAACGAAGUGUGUUGUUGGCCAGCUCAACAAAGGCGGCCAGAC
...((((((((......))))))))....(((((((...(((((...(((....)))..))))).(((.......)))..))))))).....((((((.(((.......))))))))).. ( -44.50, z-score =  -2.62, R)
>droYak2.chrX 9762172 100 - 21770863
UUUGAGUGCUCACAAUGGGGCACUCCUUUUACUUAGCCACGGAGUACGCCGAAAGUUAACUCCAAUGGAAUUUGGCCAGACG--------------------CAACAAAAGCGGCCAAAC
...((((((((......))))))))...........(((.(((((....(....)...)))))..)))..(((((((....(--------------------(.......))))))))). ( -32.00, z-score =  -2.60, R)
>consensus
UUCGAGUGCUCACAAUGGGGUACUCCUUUUACUUUGCAACGGAGGACGGCGAAAGUCAACUCCGAUGGAAUUUGGCCAAACGAAGUGUGUU_UUGGCCAGCUCAACAAAAGCGGCCAGAC
(((((((((((......))))))))..............(((((...(((....)))..)))))..))).(((((((........((.((((.....)))).))........))))))). (-26.59 = -28.16 +   1.57)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:00:47 2011