| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,319,487 – 19,319,595 |
| Length | 108 |
| Max. P | 0.594716 |
| Location | 19,319,487 – 19,319,595 |
|---|---|
| Length | 108 |
| Sequences | 4 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 95.83 |
| Shannon entropy | 0.06761 |
| G+C content | 0.50472 |
| Mean single sequence MFE | -34.10 |
| Consensus MFE | -28.25 |
| Energy contribution | -28.62 |
| Covariance contribution | 0.38 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.594716 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19319487 108 - 22422827 AUCCAGUUCCUUUGUGGGCCGAAAUAUCGGACAAGCACUUGUCACUUUUCACUGCAGUUGGCAACAGCAUCAGCAUCAGCAGCUGAAACAGGCAACAGACGAAAGGAG .(((..(((.(((((..(((((((.....(((((....)))))...))))......((((....)))).(((((.......)))))....))).))))).))).))). ( -34.50, z-score = -2.51, R) >droSim1.chrX 14941729 108 - 17042790 AUCCAGCUCCUUUGUGGGCCGAAAUAUCGGACAAGCACUUGUCACUUUUCACUGCAGUUGGCAACAGCAUCAGCAUCAGCAGCUGAAACAGGCAACAGACGAAAGGAG .(((...((.(((((..(((((((.....(((((....)))))...))))......((((....)))).(((((.......)))))....))).))))).))..))). ( -33.00, z-score = -1.81, R) >droSec1.super_8 1611493 108 - 3762037 ACCCAGCUCCUUUGUGGGCCGAAAUAUCGGACAAGCACUUGUCACUUUUCACUGCAGUUGGCAACAGCAUCAGCAUCAGCAGCUGAAACAGGCAACAGACGAAAGGAG ......((((((((((((.(((....)))(((((....)))))....)))))(((.((((....)))).(((((.......))))).....))).......))))))) ( -32.60, z-score = -1.58, R) >droEre2.scaffold_4690 9568643 106 - 18748788 AUCCAGCUCCUUUGUGGGCCGAAAUAUCGGACAAGCACUUGUCACUUUUCACUGCAGUUGGCAACAGCAUCAGCAUCAGCAGCUGCAGCUG--AACAGAGGACAGGAG .(((.(.((((((((.(((.((((.....(((((....)))))...))))..((((((((.(....((....))....)))))))))))).--.))))))))).))). ( -36.30, z-score = -1.85, R) >consensus AUCCAGCUCCUUUGUGGGCCGAAAUAUCGGACAAGCACUUGUCACUUUUCACUGCAGUUGGCAACAGCAUCAGCAUCAGCAGCUGAAACAGGCAACAGACGAAAGGAG ......(((((((((..(((((....)))).)..))).(((((...(((((((((...((....))((....))....)))).)))))..(....).))))))))))) (-28.25 = -28.62 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:00:45 2011