| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,318,161 – 19,318,276 |
| Length | 115 |
| Max. P | 0.951766 |
| Location | 19,318,161 – 19,318,276 |
|---|---|
| Length | 115 |
| Sequences | 4 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 67.18 |
| Shannon entropy | 0.50646 |
| G+C content | 0.32125 |
| Mean single sequence MFE | -19.69 |
| Consensus MFE | -8.98 |
| Energy contribution | -9.23 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.58 |
| SVM RNA-class probability | 0.951766 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19318161 115 + 22422827 AGCACAAUUCUUAAGAUAACGAAACAUUUCAAGAAACUUAAACUUAAGCAAAACUAUCGAUGAUAAUUCAAAACAAUCGAUGCUCGCUGCAUCGAUAGUUGUAUCGUAUCGAUUG ..............((((.(((.((...........((((....))))...(((((((..(((....)))........(((((.....)))))))))))))).)))))))..... ( -23.30, z-score = -2.18, R) >droSim1.chrX 14940411 100 + 17042790 AGCACAAUUCUUAAGAGAACAAAACAUUUGAAGAAACUUAAA--UGAGCAAAACUAUCGAUGAAGAUUCAUAACAA-------------CAUCGAUAGUUGUAUCAUAUCGAUUA .((....((((....)))).....(((((((......)))))--)).))..(((((((((((..(........)..-------------)))))))))))............... ( -20.70, z-score = -3.30, R) >droSec1.super_8 1610130 100 + 3762037 AGCACAAUUCUUAAGCGAACGAAACAUUUCAAGAAACUUAAA--UUAGCAAAACUAUCGAUGAAGAUUCAAAACAA-------------CAUCGAUAGUUGUAUCUUAUCGAUUA .....((((..((((...(((((....)))............--.......(((((((((((..(........)..-------------)))))))))))))..))))..)))). ( -16.20, z-score = -1.66, R) >droYak2.chrX 9760389 96 - 21770863 ---AGGGUUUUGCAUCUCAAAAAAGACACAAAAAUAUAGAGAAACAAGCAAUACCAUCGAGUAAGAUUCAAAAC---------------CAUUGAUGCUCGCUGCAUCGAAAGU- ---..(((((((..((((....................)))).............(((......))).))))))---------------).(((((((.....)))))))....- ( -18.55, z-score = -1.68, R) >consensus AGCACAAUUCUUAAGAGAACAAAACAUUUCAAGAAACUUAAA__UAAGCAAAACUAUCGAUGAAGAUUCAAAACAA_____________CAUCGAUAGUUGUAUCAUAUCGAUUA ...............................................(((..((((((((((...........................)))))))))))))............. ( -8.98 = -9.23 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:00:44 2011