Locus 15504

Sequence ID	dm3.chrX
Location	19,316,339 – 19,316,397
Length	58
Max. P	0.970179

overview

Window 8

Location	19,316,339 – 19,316,397
Length	58
Sequences	4
Columns	60
Reading direction	forward
Mean pairwise identity	80.73
Shannon entropy	0.30911
G+C content	0.33979
Mean single sequence MFE	-14.12
Consensus MFE	-8.82
Energy contribution	-11.70
Covariance contribution	2.88
Combinations/Pair	1.16
Mean z-score	-2.72
Structure conservation index	0.62
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	1.83
SVM RNA-class probability	0.970179
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chrX 19316339 58 + 22422827
UGAGCUGUGUACAUA--UAAUUUGGCGAAAGUCAAAUUAAAUGGGGUAACUAGCAUAAAA
...(((((...(((.--(((((((((....))))))))).))).....)).)))...... ( -18.40, z-score =  -5.17, R)
>droSim1.chrX 14938528 60 + 17042790
UGAGCUAUGUAUCUGCUUAACUUGGCGAAAGUCAAAUUAAAUGGGGUAACUAGCAUAUAA
...((((..(((((..((((.(((((....))))).))))...)))))..))))...... ( -17.10, z-score =  -3.43, R)
>droSec1.super_8 1608246 60 + 3762037
UGAGCUAUGUAUCUGCUUAACUCGGCGAAAGUCAAAUUAAAUGGGGUAACUAGCAUAAGA
...((((..(((((..((((...(((....)))...))))...)))))..))))...... ( -13.10, z-score =  -1.47, R)
>droYak2.chrX 9757916 57 - 21770863
UAAACUAUCUGCUUA---ACUUGAGGGAAAGUCAAAUUAAAUGGUGUAACUACCAUAAAA
...(((.(((.(((.---....)))))).)))........((((((....)))))).... (  -7.90, z-score =  -0.80, R)
>consensus
UGAGCUAUGUACCUA__UAACUUGGCGAAAGUCAAAUUAAAUGGGGUAACUAGCAUAAAA
...((((..(((((..((((((((((....))))))))))...)))))..))))...... ( -8.82 = -11.70 +   2.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:00:43 2011