Locus 15502

Sequence ID dm3.chrX
Location 19,312,807 – 19,312,926
Length 119
Max. P 0.850679
window21374

overview

Window 4

Location 19,312,807 – 19,312,926
Length 119
Sequences 3
Columns 119
Reading direction reverse
Mean pairwise identity 79.01
Shannon entropy 0.28478
G+C content 0.54367
Mean single sequence MFE -25.70
Consensus MFE -23.21
Energy contribution -22.77
Covariance contribution -0.44
Combinations/Pair 1.10
Mean z-score -1.28
Structure conservation index 0.90
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.91
SVM RNA-class probability 0.850679
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 19312807 119 - 22422827
UCCCCCUGCCACGCCAUCCAAACUGCUCAUUAUCAGAAGUAAUUUAACUUUGGGGCCGCUCUUCGCUAAUGAAGGGUGGUACCUACCACCCAACGAUCCACCAAACCGCCGCCCACUUG
...................................(((((......))))).((((.((..((((....))))(((((((....)))))))................)).))))..... ( -26.50, z-score =  -1.05, R)
>droSim1.chrX 14934984 98 - 17042790
-------UCCCCACCAUCCUAGCUGCUCAUUAUCAGAAGUAAUUUAACUUUGGGACCGCUCUUCGCUAAUGAAGGGUGGUACCCC-------AU-CCCCACC------CCGCCCACUGG
-------...........((((..((.........(((((......)))))((((((((((((((....))))))))))).))).-------..-.......------..))...)))) ( -25.90, z-score =  -1.91, R)
>droSec1.super_8 1604598 105 - 3762037
-------UCCCCGCCAUCGAAGCUGCUCAUUAUCAGAAGUAAUUUAACUUUGGGACCGCUCUUCGCUAAUGAAGGGUGGUACCCCCACACCAAA-CCCCACC------CCGCCCACUGG
-------......(((.....((............(((((......)))))((((((((((((((....))))))))))).)))..........-.......------..))....))) ( -24.70, z-score =  -0.89, R)
>consensus
_______UCCCCGCCAUCCAAGCUGCUCAUUAUCAGAAGUAAUUUAACUUUGGGACCGCUCUUCGCUAAUGAAGGGUGGUACCCCC___CCAAA_CCCCACC______CCGCCCACUGG
........................((.........(((((......)))))((((((((((((((....))))))))))).)))..........................))....... (-23.21 = -22.77 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:00:40 2011