| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,312,335 – 19,312,442 |
| Length | 107 |
| Max. P | 0.915847 |
| Location | 19,312,335 – 19,312,442 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 89.48 |
| Shannon entropy | 0.17034 |
| G+C content | 0.31857 |
| Mean single sequence MFE | -25.24 |
| Consensus MFE | -19.63 |
| Energy contribution | -19.55 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.25 |
| SVM RNA-class probability | 0.915847 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19312335 107 - 22422827 AAAAAUCUCCAGAAAAAUGAAUUUCGAAAUUGAUAAAAAUUGUUUUGCUGCUACA-------------AACGGCAAAUCGUCUUUUGGGGGUAAACCCAAAUUUGAAUAUUUUGUUGGAG ......((((((.((((((...((((((.............(.(((((((.....-------------..))))))).)....((((((......)))))))))))))))))).)))))) ( -26.90, z-score = -2.89, R) >droSim1.chrX 14934500 105 - 17042790 AAAAAUCUCCAG-AAAAUGAAUUUCGAAAUUGAUAAAAAUUGUUUUGCUGCUACA-------------AACGGCAAAUCGUC-UUUGGGGGUAAACCCAAAUUUGAAUAUUUUGUUGGAG ......((((((-((((((...((((((.............(.(((((((.....-------------..))))))).)...-((((((......)))))))))))))))))).)))))) ( -26.00, z-score = -2.66, R) >droSec1.super_8 1604113 105 - 3762037 AAAAAUCUCCAG-AAAAUGAAUUUCGAAAUUGAUAAAAAUUGUUUUGCUGCUACA-------------AACGGCAAAUCGUC-AUUGGGGGUAAACCCAAAUUUGAAUAUUUUGUUGGAG ......((((((-((((((...((((((.............(.(((((((.....-------------..))))))).)...-.(((((......))))).)))))))))))).)))))) ( -25.50, z-score = -2.44, R) >droYak2.chrX 9754054 116 + 21770863 AGAAAUCUGUAG-AAAAUGAUUUUCAAAAUUGAUAAAAAUUGUUUUGCUGCUACAAAACGGCAACGGCAACGGCAAAUCGUCUUU---GGGUAAACCCAAAUUUGAAUAUUUUGUUGGAG .((((((.....-.....)))))).....(..((((((.((((.((((((........))))))((....)))))).(((..(((---(((....))))))..)))...))))))..).. ( -27.00, z-score = -2.00, R) >droEre2.scaffold_4690 9561721 103 - 18748788 ACAAAUCUCUAG-AAAAUGAUUUUCAAAAUUGAUAAAAAUUGUUUUUCUGCUACA-------------AACGGCAAAUCGUCUUU---GGGUAAACCCAAAUUUGAAUAUUUUGUUGGAG ......((((((-((((..(((((((....)))...))))..).)))))).....-------------..((((((((((..(((---(((....))))))..)))....)))))))))) ( -20.80, z-score = -2.02, R) >consensus AAAAAUCUCCAG_AAAAUGAAUUUCGAAAUUGAUAAAAAUUGUUUUGCUGCUACA_____________AACGGCAAAUCGUCUUUUGGGGGUAAACCCAAAUUUGAAUAUUUUGUUGGAG ......((((((.((((((...((((((.............(.(((((((....................))))))).).........(((....)))...)))))))))))).)))))) (-19.63 = -19.55 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:00:39 2011