| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,309,904 – 19,310,048 |
| Length | 144 |
| Max. P | 0.717631 |
| Location | 19,309,904 – 19,310,048 |
|---|---|
| Length | 144 |
| Sequences | 5 |
| Columns | 146 |
| Reading direction | forward |
| Mean pairwise identity | 85.24 |
| Shannon entropy | 0.24207 |
| G+C content | 0.44256 |
| Mean single sequence MFE | -32.22 |
| Consensus MFE | -28.46 |
| Energy contribution | -28.46 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.717631 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19309904 144 + 22422827 AACUGCAUCAUAUUGCAGCGGCAACAACCGCAUAAAGACAUUAAGCGCAUUUAAUUUGAAGUGGCAGGAUGAAUGGAAAUUUGCAACGAGGCAAAAUGAACACCCACCCACCAACCAACCGAGCAAUAUGACCUGCAUUAUAUG-- ...(((((((((((((.((((......)))).............((.(((((......))))))).((.((..(((...(((((......))))).((......))....)))..)).))..)))))))))..)))).......-- ( -36.20, z-score = -2.46, R) >droSim1.chrX 14932151 124 + 17042790 AACUGCAUCAUAUUGCAGCGGCAACAACCGCAUAAAGACAUUAAGCGCAUUUAAUUUGAAGUGGCAGGAUGAAUGGAAAUUUGCAACGAGGCAAA---------------CCCACCAACCGAGCA-UAUGACCUGCAUUA------ ...((((((((((.((.((((......)))).......((((..((.(((((......)))))))..))))..(((...(((((......)))))---------------....))).....)))-)))))..))))...------ ( -31.40, z-score = -1.54, R) >droSec1.super_8 1601813 138 + 3762037 AACUGCAUCAUAUUGCAGCGGCAACAACCGCAUAAAGACAUUAAGCGCAUUUAAUUUGAAGUGGCAGGAUGAAUGGAAAUUUGCAACGAGGCAAACCCAGC-CCACCCCACCCACCAACCGAGCA-UAUGACCUGCAUUA------ ...((((((((((.((.((((......)))).............................((((..((.((..(((...(((((......))))).)))..-.)).))...)))).......)))-)))))..))))...------ ( -31.70, z-score = -0.90, R) >droYak2.chrX 9751544 123 - 21770863 AACUGCAUCAUAUUGCAGCGGCAACAACCGCAUAAAGACAUUAAGCGCAUUUAAUUUGAAGUGGCAGGAUGAAUGGAAAUUUGC--CGAGGCAA--------------------CCCACUGAGCA-UAUGACCUGCAUUAUAUAUG ...((((((((((.((.((((......)))).......((((..((.(((((......)))))))..))))..(((....((((--....))))--------------------.)))....)))-)))))..))))......... ( -30.90, z-score = -1.06, R) >droEre2.scaffold_4690 9559405 117 + 18748788 AACUGCAUCAUAUUGCAGCGGCAACAACCGCAUGAAGGCAUUAAGCGCAUUUAAUUUGAAGUGGCAGGAUGAAUGGAAAUUUGC--CGAGGCAA--------------------CCCGAUGAGCA-UAUGACCUGCAUUA------ ...((((((((((.((.((((......)))).....((((.....(.((((((.((((......)))).))))))).....)))--)(.(....--------------------).).....)))-)))))..))))...------ ( -30.90, z-score = -0.30, R) >consensus AACUGCAUCAUAUUGCAGCGGCAACAACCGCAUAAAGACAUUAAGCGCAUUUAAUUUGAAGUGGCAGGAUGAAUGGAAAUUUGCAACGAGGCAAA_______________CC_ACCAACCGAGCA_UAUGACCUGCAUUA______ ...(((((((((.(((.((((......)))).......((((..((.(((((......)))))))..)))).........((((......))))............................))).)))))..))))......... (-28.46 = -28.46 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:00:38 2011