| Sequence ID | dm3.chr2L |
|---|---|
| Location | 1,073,335 – 1,073,437 |
| Length | 102 |
| Max. P | 0.967428 |
| Location | 1,073,335 – 1,073,437 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 79.18 |
| Shannon entropy | 0.38904 |
| G+C content | 0.39761 |
| Mean single sequence MFE | -24.35 |
| Consensus MFE | -9.88 |
| Energy contribution | -12.02 |
| Covariance contribution | 2.14 |
| Combinations/Pair | 1.17 |
| Mean z-score | -3.15 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.78 |
| SVM RNA-class probability | 0.967428 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 1073335 102 - 23011544 --UUUUCUC-GAGUUGUGAAAUUUGCUCCCGAAUACCUCGGAUGCGCAAGUACAUAUGUAUGUACAUACAUAUGUGCCGACUGUUCUACACAUUUUCUCAAUUAA --.......-(((.((((......((..((((.....))))..))....((((((((((((....))))))))))))...........))))....)))...... ( -29.70, z-score = -4.30, R) >droSim1.chr2L 1044038 98 - 22036055 --UUUUCUC-GAGUUGUGAAAUUUGCUCCCGAAUACCUCGGAUGCGCAAGUACAUAUGUAUGUACAUAUGU---GCC-GACUGCUCUACACAUUUUCUCAAUUAA --.......-(((.((((......((..((((.....))))..))(((.((((((((((....))))))))---)).-...)))....))))....)))...... ( -28.60, z-score = -4.18, R) >droSec1.super_14 1026833 98 - 2068291 --UUUUCUC-GAGUUGUGAAAUUUGCUCCCGAAUACCUCGGAUGCGCAAGUACAUAUGUAUGUACAUAUGU---GCC-GACUGCUCUACACAUUUUCUCAAUUAA --.......-(((.((((......((..((((.....))))..))(((.((((((((((....))))))))---)).-...)))....))))....)))...... ( -28.60, z-score = -4.18, R) >droEre2.scaffold_4929 1115080 90 - 26641161 --UUUUCUC-GAGUUGUGAAAUUUGCUCCCGAAUACCUCGGAUGCGCAAGUACAUAC------AUAUGUGC---U---GACUGCUCUACACAUUUUCUCAAUUAA --.......-(((.((((......((..((((.....))))..))((((((((((..------..))))))---)---...)))....))))....)))...... ( -23.80, z-score = -3.58, R) >droYak2.chr2L 1049772 99 - 22324452 --UUUUCUC-GAGUUGUGAAAUUUGCUCCCGAAUACCGCGGAUGCGCAAGUACAUAUGUACGAGUAUGUGC---UCUACACUGCUCUACACAUUUUCUCAAUUAA --.......-(((.((((......(((((((.....)).))).))....((((....))))(((((.(((.---....))))))))..))))....)))...... ( -25.20, z-score = -2.39, R) >droAna3.scaffold_12943 3592980 89 - 5039921 UUUUCUCUCAAAGUUGCGAAA-UCGAUCUCG-----CUUCGAU---CAAGUUCAUAU------GUACUUUCCGCACCAGACAG-UCCACACAUUUUCUCAAUUAA ...........(((((.((((-..((((...-----....)))---).........(------(.(((.((.......)).))-).)).....)))).))))).. ( -10.20, z-score = -0.30, R) >consensus __UUUUCUC_GAGUUGUGAAAUUUGCUCCCGAAUACCUCGGAUGCGCAAGUACAUAUGUAUGUACAUAUGC___UCC_GACUGCUCUACACAUUUUCUCAAUUAA ..........(((.((((..((((((..((((.....))))....)))))).((((((......))))))..................))))....)))...... ( -9.88 = -12.02 + 2.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:07:41 2011