| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,309,465 – 19,309,558 |
| Length | 93 |
| Max. P | 0.944191 |
| Location | 19,309,465 – 19,309,558 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 56.68 |
| Shannon entropy | 0.68728 |
| G+C content | 0.28940 |
| Mean single sequence MFE | -15.70 |
| Consensus MFE | -4.68 |
| Energy contribution | -5.44 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.30 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.50 |
| SVM RNA-class probability | 0.944191 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19309465 93 - 22422827 -AACAAGUGACAAAAAGUAUGCUGUACAAAUAAAGAAACCGUCGUUUUUAGAAGUACAUUCCUUAAAUAACAC----AUUAUUUGCUGCAUACUUUUA---------- -...........(((((((((((((((...((((((........))))))...))))).....(((((((...----.)))))))..)))))))))).---------- ( -18.90, z-score = -2.62, R) >droSim1.chrX 14931739 79 - 17042790 -AACAAGUGCCAAAAAGUAUGCUAUAUA---CAAAAAA-----------AGAAGUACAUUCCCCAAAUAACAC----AUCAUUUGCUGCAUACUUUUG---------- -...........((((((((((......---.......-----------.(((.....)))..(((((.....----...)))))..)))))))))).---------- ( -12.20, z-score = -2.18, R) >droSec1.super_8 1601377 94 - 3762037 -AACAAGUGCCAAAAAGUAUGCUAUACA---AAAAAAACCGUCGUUUAUAGAAGUACAUUCCCCAAAUAACACAAAUAAUGUGUGCUGCAUACUUUUG---------- -...........((((((((((......---....((((....)))).....(((((((.....................))))))))))))))))).---------- ( -17.10, z-score = -2.50, R) >droYak2.chrX 9751146 72 + 21770863 AAACAAGUGUCAAAAAGUAUGCUGCCUA---GAAAAGA-----------AAAAACAUAGUU------UAAC------AAUAUUUGUUGCAUAUUUUUA---------- ............((((((((((......---.......-----------..((((...)))------)(((------(.....)))))))))))))).---------- ( -8.80, z-score = 0.07, R) >triCas2.ChLG7 3293390 96 - 17478683 -AAAAAGAGUCAAAAAUUAACAUAUGAAAUAAUAUGAAGC---------AAAAAAGUCGUUUUUGACCAAAGUCA--AACGAUUAUUUUGGACCAUUGACGAUUAUUA -.......(((((.......(((((......)))))...(---------((((.(((((((..((((....))))--))))))).))))).....)))))........ ( -21.50, z-score = -4.01, R) >consensus _AACAAGUGCCAAAAAGUAUGCUAUACA___AAAAAAA_C_________AGAAGUACAUUCCCCAAAUAACAC____AAUAUUUGCUGCAUACUUUUG__________ ............((((((((((.................................................................))))))))))........... ( -4.68 = -5.44 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:00:37 2011