| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,296,317 – 19,296,383 |
| Length | 66 |
| Max. P | 0.734385 |
| Location | 19,296,317 – 19,296,383 |
|---|---|
| Length | 66 |
| Sequences | 5 |
| Columns | 66 |
| Reading direction | reverse |
| Mean pairwise identity | 95.45 |
| Shannon entropy | 0.07695 |
| G+C content | 0.41632 |
| Mean single sequence MFE | -14.80 |
| Consensus MFE | -13.28 |
| Energy contribution | -12.96 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.734385 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19296317 66 - 22422827 GAGCACAAACUUGAUAUGCGUGGGCAUUACAAGAGUGAUGCACCAAAAACACUCGGAUUUCCAUGA ..(((...........))).((((((((((....))))))).))).........((....)).... ( -15.10, z-score = -1.29, R) >droSim1.chrX 14913853 66 - 17042790 GAGCACAAACUUGAUAUGCGUGGGCAUUACAAGAGUGAUGCACCAAAAACACUCGGAUUUCCAUGA ..(((...........))).((((((((((....))))))).))).........((....)).... ( -15.10, z-score = -1.29, R) >droSec1.super_8 1588345 66 - 3762037 GAGCACAAACUUGAUAUGCGUGGGCAUUACAAGAGUGAUGCACCAAAAACACUCGGAUUUCCAUGA ..(((...........))).((((((((((....))))))).))).........((....)).... ( -15.10, z-score = -1.29, R) >droYak2.chrX 9737823 66 + 21770863 GAACAAAAACUUGAUAUGCGUGGGCAUUACAAGAGUGAUGCACUAAAAACACUCGAAUUUCCAUGA ..................((((((.(((....(((((.(........).))))).))).)))))). ( -13.00, z-score = -1.78, R) >droEre2.scaffold_4690 9546466 65 - 18748788 GAAC-AAAACUUGAUAUGCGUGGGCAUUACAAGAGUGAUGCACUAAAAACACUUGGAUUUCCAUGA ....-.............((((((((((((....))))))).((((......))))....))))). ( -15.70, z-score = -2.69, R) >consensus GAGCACAAACUUGAUAUGCGUGGGCAUUACAAGAGUGAUGCACCAAAAACACUCGGAUUUCCAUGA ..................((((((.(((....(((((.(........).))))).))).)))))). (-13.28 = -12.96 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:00:31 2011