| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,293,923 – 19,294,022 |
| Length | 99 |
| Max. P | 0.568432 |
| Location | 19,293,923 – 19,294,022 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 73.50 |
| Shannon entropy | 0.41068 |
| G+C content | 0.46992 |
| Mean single sequence MFE | -25.77 |
| Consensus MFE | -15.10 |
| Energy contribution | -14.22 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.568432 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19293923 99 - 22422827 --------UCCAACGACUGAAAUCGUUAAUCGCAGCGAAAAGCACAUGGUAUAGAUUACAUUUGACCUAUGUCGCU--UCACAGCAAGUGGCUACAGCCUCGCUGCUCC----------- --------...(((((......)))))....(((((((.((((((((((..(((((...)))))..)))))).)))--)..........(((....))))))))))...----------- ( -29.60, z-score = -2.76, R) >droEre2.scaffold_4690 9544253 105 - 18748788 --------UCCACUGACUGAAGCCGUUAAUCGCAACGGAAAGCACAUGGUAUAGAUUACAUUUGACCUAUGUCGCU--GCACAGCAAGU-GCCAUAGCCACAUCUAUAGCUACUCU---- --------..((((..(((...(((((......)))))..(((((((((..(((((...)))))..)))))).)))--...)))..)))-)...((((..........))))....---- ( -23.20, z-score = -0.38, R) >droYak2.chrX 9735434 104 + 21770863 UCCACAUUUCCACUGACUGAAGCCGUUAAUCGCAACGGAAAGCACAUGGUAUAGAUUACAUUUGAACUAUGUCGCUCCACACAGCAAGU-GCUAUAGCCCCAUCG--------------- ..........((((..(((...(((((......)))))..((((((((((.(((((...))))).))))))).))).....)))..)))-)..............--------------- ( -23.00, z-score = -1.62, R) >droSec1.super_8 1586079 109 - 3762037 --------UUAAACGACUGAAAUCGUUAAUCGCAGCGGCAAGCACAUGGUAUAGAUUACAUUUGACCUAUGUCGCU--CCAUAGCCAGU-GCUCUAGCCCCGCAUCCUGAUAGCUGCUCC --------...(((((......)))))....((((((((.(((((((((..(((((...)))))..)))))).)))--.....))).((-((.........)))).......)))))... ( -27.30, z-score = -0.96, R) >consensus ________UCCAACGACUGAAACCGUUAAUCGCAACGGAAAGCACAUGGUAUAGAUUACAUUUGACCUAUGUCGCU__ACACAGCAAGU_GCUAUAGCCCCACCGCU_G___________ ..............(.(((...(((((......)))))..(((((((((..(((((...)))))..)))))).))).....)))).....((....))...................... (-15.10 = -14.22 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:00:30 2011