| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,293,507 – 19,293,601 |
| Length | 94 |
| Max. P | 0.998141 |
| Location | 19,293,507 – 19,293,601 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 66.24 |
| Shannon entropy | 0.52322 |
| G+C content | 0.42186 |
| Mean single sequence MFE | -21.61 |
| Consensus MFE | -14.62 |
| Energy contribution | -13.88 |
| Covariance contribution | -0.75 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.27 |
| SVM RNA-class probability | 0.998141 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19293507 94 + 22422827 UUUUCCCCAG---UGCAUCCAAUAAUUGAA------------CCCCUCGAUGAGCCUCGUUAAGUGCGUGUUUUUUCCGCUCGCGUU-UUCGAUUUAUUGUUGGAUGAUU ..........---..(((((((((((((((------------..(((..(((.....)))..)).(((.((.......)).))))..-))))))....)))))))))... ( -21.30, z-score = -2.14, R) >droSec1.super_8 1585616 106 + 3762037 UUUUCCCCAG---UGCAUCCAAUAAUUGAACUCCCCUCCCCCGCACUCGAUGAGCCUCGUUAAGUGCGUGUUUUUUCCGUUCGCGUU-UUCGAUUUAUUGUUGGAUGAUU ..........---..(((((((((((.((((..........((((((..(((.....)))..))))))..........)))).((..-..))....)))))))))))... ( -28.35, z-score = -4.51, R) >droEre2.scaffold_4690 9543868 97 + 18748788 UUUUCCCCAG---UGCAUCCAAUAAUUG---------CCCCCUCACUCGAUGAGCCUCGUUAAGUGUGUGUUUUUUCCGCUCAUGUU-UUCGAUUUAUUGUUGGAUGAUU ..........---..(((((((((((..---------....((((.....))))..(((....(((.(((.......))).)))...-..)))...)))))))))))... ( -20.60, z-score = -2.71, R) >droVir3.scaffold_13049 3396239 101 + 25233164 UGUUUCAUGGACUUUCCUUUAAUAAUGAAA---------UCAUUUUAAGAUCUUUAUCAUUCUAUGCAUGUCCUCCUGUGCCGUGUUGCUUUGUUUGUUCGCGGAUGACU ....((((((((........(((.((((((---------((.......))).))))).)))........)))).......(((((..((.......)).))))))))).. ( -16.19, z-score = -0.23, R) >consensus UUUUCCCCAG___UGCAUCCAAUAAUUGAA_________CCCUCACUCGAUGAGCCUCGUUAAGUGCGUGUUUUUUCCGCUCGCGUU_UUCGAUUUAUUGUUGGAUGAUU ...............(((((((((((.................((((..(((.....)))..))))((((...........))))...........)))))))))))... (-14.62 = -13.88 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:00:30 2011