| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,293,396 – 19,293,491 |
| Length | 95 |
| Max. P | 0.716585 |
| Location | 19,293,396 – 19,293,491 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 78.45 |
| Shannon entropy | 0.30216 |
| G+C content | 0.27033 |
| Mean single sequence MFE | -13.74 |
| Consensus MFE | -10.72 |
| Energy contribution | -10.83 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.716585 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19293396 95 + 22422827 -----AAUAGAAAUACUAAUGCACUAAGCCAAAAAUUGAUUGAUAGUUUGUUAACAAACUAAAGGGGGCUAUAAAUCAAUACCAAAUUGAAUAAUAUAAU -----.....................((((.........((..(((((((....)))))))..)).)))).....(((((.....))))).......... ( -11.90, z-score = -0.55, R) >droYak2.chrX 9734901 97 - 21770863 ---CUAAGAAAAAUCCUAACGCAACAAGCAAACAAUUGAUUGAUAGUUCGUUAUCAAAUAAAAGGGUGCUAUAAAUCAAUACGUAAUUGAAUGAUUUAAU ---.......(((((...........((((..(..(((.(((((((....))))))).)))..)..)))).....(((((.....)))))..)))))... ( -14.60, z-score = -1.31, R) >droEre2.scaffold_4690 9543755 100 + 18748788 AUAAAAAAAAACACACAAUUACACUAAGCCAACAAUUGAUCGAUAGUUCGUUAUCAAACUAAAGGGAGCUAUAAGUCAAUACCAAAUUGAAUAAUUGAAU ...............((((((...(((.......((((((..(((((((.((..........)).)))))))..))))))......)))..))))))... ( -14.72, z-score = -2.45, R) >consensus _____AAAAAAAAUACUAAUGCACUAAGCCAACAAUUGAUUGAUAGUUCGUUAUCAAACUAAAGGGAGCUAUAAAUCAAUACCAAAUUGAAUAAUUUAAU ..................................(((((((.(((((((.((..........)).))))))).))))))).................... (-10.72 = -10.83 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:00:29 2011