Locus 15491

Sequence ID dm3.chrX
Location 19,292,649 – 19,292,754
Length 105
Max. P 0.968851
window21358 window21359

overview

Window 8

Location 19,292,649 – 19,292,754
Length 105
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 85.25
Shannon entropy 0.22185
G+C content 0.50923
Mean single sequence MFE -30.12
Consensus MFE -26.85
Energy contribution -26.60
Covariance contribution -0.25
Combinations/Pair 1.03
Mean z-score -1.37
Structure conservation index 0.89
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.68
SVM RNA-class probability 0.783598
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 19292649 105 + 22422827
GACUAAUGAAUGCCGUCGAUGAUUCAACGGCACCAGCUGCAUGCACUCGCAUUUGAUUGAGCGCCCACACCGGCUAUCAAUUUUCUCGCAAGUCGCGACUUAUGA---------------
((((......((((((.((....)).)))))).....(((((((....))))..((((((..(((......)))..)))))).....)))))))...........--------------- ( -28.50, z-score =  -0.93, R)
>droSec1.super_8 1584662 105 + 3762037
GACUAAUGAAUGCCGUCGAUGAUUCAACGGCACCAGCUGCAUGCACUCGCAUUUGAUUGAGCGCCCCCACCGGCUAUCAAUUUCCUCGCAAGUCGCGACUUAUGA---------------
((((......((((((.((....)).)))))).....(((((((....))))..((((((..(((......)))..)))))).....)))))))...........--------------- ( -28.50, z-score =  -1.14, R)
>droYak2.chrX 9734086 120 - 21770863
GACUAAUGAAUGCCGUCGAUGAUUCAACGGCACCAGCUGCAUGCACUCGCAUUUGAUUGAGCGCCCCCACUGGCUAUCAAUUUCCUCACAAGUCGAGAAGCAACCGCUCGAGACUUAUGA
......(((.((((((.((....)).))))))((((.((...((.((((........)))).))...))))))...)))......(((.(((((..((.((....))))..))))).))) ( -33.50, z-score =  -1.73, R)
>droEre2.scaffold_4690 9542967 120 + 18748788
GACUAAUGAAUGCCGUCGAUGAUUCAACGGCACCAGCUGCAUGCACUCGCAUUUGAUUGAGCGCCCCCACUGGCUAUCAAUUUCCUCACAAGUCGAGAACCAACCACUCGAGACUUAUGA
......(((.((((((.((....)).))))))((((.((...((.((((........)))).))...))))))...)))......(((.(((((..((.........))..))))).))) ( -30.00, z-score =  -1.69, R)
>consensus
GACUAAUGAAUGCCGUCGAUGAUUCAACGGCACCAGCUGCAUGCACUCGCAUUUGAUUGAGCGCCCCCACCGGCUAUCAAUUUCCUCACAAGUCGAGAAUCAACA_______________
((((..(((.((((((.((....)).)))))).(((.(((........))).)))(((((..(((......)))..)))))....)))..)))).......................... (-26.85 = -26.60 +  -0.25)

alignment

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secondary structure

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dotplot

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Window 9

Location 19,292,649 – 19,292,754
Length 105
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 85.25
Shannon entropy 0.22185
G+C content 0.50923
Mean single sequence MFE -40.73
Consensus MFE -36.65
Energy contribution -36.90
Covariance contribution 0.25
Combinations/Pair 1.03
Mean z-score -2.04
Structure conservation index 0.90
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.81
SVM RNA-class probability 0.968851
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 19292649 105 - 22422827
---------------UCAUAAGUCGCGACUUGCGAGAAAAUUGAUAGCCGGUGUGGGCGCUCAAUCAAAUGCGAGUGCAUGCAGCUGGUGCCGUUGAAUCAUCGACGGCAUUCAUUAGUC
---------------.......((((.....))))(((........((((((((..((((((..........))))))..))).)))))((((((((....)))))))).)))....... ( -36.50, z-score =  -1.53, R)
>droSec1.super_8 1584662 105 - 3762037
---------------UCAUAAGUCGCGACUUGCGAGGAAAUUGAUAGCCGGUGGGGGCGCUCAAUCAAAUGCGAGUGCAUGCAGCUGGUGCCGUUGAAUCAUCGACGGCAUUCAUUAGUC
---------------.......((((.....))))....((((((.((((((....((((((..........)))))).....))))))((((((((....))))))))....)))))). ( -35.90, z-score =  -1.13, R)
>droYak2.chrX 9734086 120 + 21770863
UCAUAAGUCUCGAGCGGUUGCUUCUCGACUUGUGAGGAAAUUGAUAGCCAGUGGGGGCGCUCAAUCAAAUGCGAGUGCAUGCAGCUGGUGCCGUUGAAUCAUCGACGGCAUUCAUUAGUC
(((((((((..((((....))))...)))))))))....((((((.((((((....((((((..........)))))).....))))))((((((((....))))))))....)))))). ( -46.50, z-score =  -2.93, R)
>droEre2.scaffold_4690 9542967 120 - 18748788
UCAUAAGUCUCGAGUGGUUGGUUCUCGACUUGUGAGGAAAUUGAUAGCCAGUGGGGGCGCUCAAUCAAAUGCGAGUGCAUGCAGCUGGUGCCGUUGAAUCAUCGACGGCAUUCAUUAGUC
(((((((((..(((.........))))))))))))....((((((.((((((....((((((..........)))))).....))))))((((((((....))))))))....)))))). ( -44.00, z-score =  -2.58, R)
>consensus
_______________GCAUAAGUCGCGACUUGCGAGGAAAUUGAUAGCCAGUGGGGGCGCUCAAUCAAAUGCGAGUGCAUGCAGCUGGUGCCGUUGAAUCAUCGACGGCAUUCAUUAGUC
..........................((((.(((((..........((((((....((((((..........)))))).....))))))((((((((....)))))))).))))).)))) (-36.65 = -36.90 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:00:28 2011