| Sequence ID | dm3.chr2L |
|---|---|
| Location | 12,004,098 – 12,004,188 |
| Length | 90 |
| Max. P | 0.987965 |
| Location | 12,004,098 – 12,004,188 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 72.03 |
| Shannon entropy | 0.48608 |
| G+C content | 0.46028 |
| Mean single sequence MFE | -15.73 |
| Consensus MFE | -9.94 |
| Energy contribution | -11.08 |
| Covariance contribution | 1.14 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.30 |
| SVM RNA-class probability | 0.987965 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 12004098 90 + 23011544 CAUACAUAUGAAUAUGUAUGUAAAAACCCAGGGCGAAAAAGUCAUGAAAACCCAUUGC----CUCUAUACACGCCCACAAAUGCGAGCCCUGCG ((((((((....))))))))........((((((......((.(((......))).))----.........(((........))).)))))).. ( -22.40, z-score = -3.66, R) >droSim1.chr2L 11808241 82 + 22036055 --------CAUACAUAUAUGUAAAAACCCAGGGCGAAAAAGUCAUGAAAACCCAUUGC----CUCUAUACACGCCCACAAAUGCGAGCCCUGCG --------..((((....))))......((((((......((.(((......))).))----.........(((........))).)))))).. ( -16.80, z-score = -2.34, R) >droSec1.super_16 199658 82 + 1878335 --------CAUACAUAUAUGUAAAAACCCAGGGCGAAAAAGUCAUGAAAACCCAUUGC----CUCUAUACACGCCCACAAAUGCGAGCCCUGCG --------..((((....))))......((((((......((.(((......))).))----.........(((........))).)))))).. ( -16.80, z-score = -2.34, R) >droYak2.chr2L 8423050 73 + 22324452 ----------------CAUAUAAAAACCUAGGGCGAAAAUGUCAUGAAAACCCAGUGC-----UCUAUACACGCCCACAAAUGCGAGCCCUGCG ----------------............((((((.....(((...((..((...))..-----))...)))(((........))).)))))).. ( -13.00, z-score = -0.95, R) >droEre2.scaffold_4929 13230910 78 - 26641161 ----------------CAUAUAAAAACCCAGGGCGAAAAUGUCAUGAAAACCCAUUGCUCUGCUCUAUACACGCCCACAAAUGCGAGCUCUGCG ----------------............((((((......((.(((......))).)).............(((........))).)))))).. ( -13.10, z-score = -0.62, R) >droWil1.scaffold_180703 1181137 71 - 3946847 --------------UUUGCCAACCAAUCAACCUUGAAAUUGCUAACAAAUUGUAA-GC-----AACACACACGCCCCCAAAGGCGAUCUCU--- --------------.(((((......(((....)))..(((((.((.....)).)-))-----))................))))).....--- ( -12.30, z-score = -2.45, R) >consensus ______________U_UAUGUAAAAACCCAGGGCGAAAAAGUCAUGAAAACCCAUUGC____CUCUAUACACGCCCACAAAUGCGAGCCCUGCG ............................((((((......((.(((......))).)).............(((........))).)))))).. ( -9.94 = -11.08 + 1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:34:08 2011