| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,288,540 – 19,288,630 |
| Length | 90 |
| Max. P | 0.541099 |
| Location | 19,288,540 – 19,288,630 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 87.63 |
| Shannon entropy | 0.17041 |
| G+C content | 0.30275 |
| Mean single sequence MFE | -19.56 |
| Consensus MFE | -9.48 |
| Energy contribution | -11.56 |
| Covariance contribution | 2.08 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.98 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.541099 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19288540 90 + 22422827 GUCUACAUUCUGGCUUACAAAUGGUUUACAUUCAAUUGAGAUCAAUAAACCAA-------GAGUUUUAAAUAGCUAAUAAGAAAUUCGCCAAUGUAA ...(((((..((((.......(((((((...((......))....))))))).-------(((((((.............)))))))))))))))). ( -18.52, z-score = -2.66, R) >droSim1.chrX 14909259 97 + 17042790 GUCUACAUUCUGGCUAACAAAUGGUUCACAUUCCAUUAGGAUCAAUAAACCCAGAAAUCUGAGUUUAUAAUAGCUAAUAAAAAAUUCGAGAAUGUAA ...(((((((((((((.(.(((((........))))).).....((((((.(((....))).))))))..))))).............)))))))). ( -22.51, z-score = -3.58, R) >droSec1.super_8 1580595 97 + 3762037 GUCUACAUUCUGGCUAACAAAUGGUUCACAUUCCAUUAAGAUCAAUAAACCCAGAAAUCUGAGUUUAUAAUAGCUAAUAAAAAAUUCGACAAUGUAA ...((((((.((((((...(((((........))))).......((((((.(((....))).))))))..))))))..............)))))). ( -17.66, z-score = -2.70, R) >consensus GUCUACAUUCUGGCUAACAAAUGGUUCACAUUCCAUUAAGAUCAAUAAACCCAGAAAUCUGAGUUUAUAAUAGCUAAUAAAAAAUUCGACAAUGUAA ...((((((.((((((...(((((........))))).......((((((.(((....))).))))))..))))))..............)))))). ( -9.48 = -11.56 + 2.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:00:23 2011