| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,286,324 – 19,286,424 |
| Length | 100 |
| Max. P | 0.702231 |
| Location | 19,286,324 – 19,286,424 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 83.84 |
| Shannon entropy | 0.22232 |
| G+C content | 0.41223 |
| Mean single sequence MFE | -22.27 |
| Consensus MFE | -12.83 |
| Energy contribution | -14.17 |
| Covariance contribution | 1.34 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.54 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.702231 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19286324 100 - 22422827 AGGUGACAGGGCAGGAAUUUUCGCAGGAAUUCAAGGAG-CUCGAAACUGUGGGAAAACCCACAAAAAAAAAAAUAGUCACACUACGACCCAAAUAUAACAA (((((((.((((..((((((......)))))).....)-))).....((((((....))))))............))))).)).................. ( -25.00, z-score = -2.94, R) >droEre2.scaffold_4690 9537111 88 - 18748788 AGGUGACAAGGCAGGAAUUUUCGC----AUUCAAGGAG-CUCCAAACUAUGGGAAAAUCCAC--------AAAAAGUCACAGGACGAGCCAAAUAUAACAA .(....)..(((.(((.(((((.(----((....((..-..)).....))).))))))))..--------.....(((....)))..)))........... ( -21.70, z-score = -2.97, R) >droSec1.super_8 1578527 96 - 3762037 AGGUGACAACGCAGGAAUUUUCGCAGGAAUUCAAGGAGACUCGAAACUGUGUGAAAACCCACGA-----AAAAUAGUCACAAUACGAGCCAAAUAUAACAA ..(((((..((..((..((((((((.(..(((.((....)).)))..).))))))))))..)).-----......)))))..................... ( -20.10, z-score = -1.72, R) >consensus AGGUGACAAGGCAGGAAUUUUCGCAGGAAUUCAAGGAG_CUCGAAACUGUGGGAAAACCCAC_A_____AAAAUAGUCACAAUACGAGCCAAAUAUAACAA ..(((((.......((((((......))))))...............((((((....))))))............)))))..................... (-12.83 = -14.17 + 1.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:00:22 2011