| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,286,075 – 19,286,189 |
| Length | 114 |
| Max. P | 0.515666 |
| Location | 19,286,075 – 19,286,189 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 75.13 |
| Shannon entropy | 0.42061 |
| G+C content | 0.44544 |
| Mean single sequence MFE | -29.68 |
| Consensus MFE | -15.60 |
| Energy contribution | -18.36 |
| Covariance contribution | 2.76 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.515666 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19286075 114 + 22422827 CCAUUAGGCAGGCAGGCGGGCAGGCAACAACGCUUGCCAAUCUGCCAUCGAACUUCCAUUCAUUGAGCUAUUUUUGGUGUAU-GGGUUCAAAGGAAUUUCAUUAGACAUCGCUUG--- ....(((((.((((((..(((((((......)))))))..))))))...((((..((((.(((..((.....))..))).))-)))))).....................)))))--- ( -40.40, z-score = -3.65, R) >droEre2.scaffold_4690 9536869 95 + 18748788 CGAUUAGAACAGCAAG------------AACAGUU--UUGUCUGCCGUCAAACU-----CUAUUGAGGUAUUUCUGGUGUAA-GGGAUCAAAGGAAUUUCAUUAGACAUGGUUUG--- .........(((((((------------(....))--))).)))....((((((-----(((.((((((...(((..((...-.....))..))))))))).))))....)))))--- ( -15.80, z-score = 1.15, R) >droYak2.chrX 9727765 103 - 21770863 CCAUUAGGCGAACAA-CG----------AACGCUUUGUUGCCAGCCAUCGAACU-CCAUUGAGUUA--UGUUGCUGGUGUAA-GGGAUCAAAGGAAUUUCAUUAGACAUGACUUUGGG ((...(((((.....-..----------..)))))....((((((.((..((((-(....))))).--.)).))))))....-))..((((((..((.((....)).))..)))))). ( -26.10, z-score = -0.66, R) >droSec1.super_8 1578286 109 + 3762037 CCAUUAGGCAGGCAAGCAG-----CAACAACGCUUGCCAAUCUGCCAUCGAACU-CCAUUCAUUGAGCUAUUCCUGGUGCAAAGGGUUCAAAGGAAUUUCAUUAGACAUAGCUUG--- ......(((((((((((..-----.......)))))))....))))........-.........(((((((..((((((....((((((....))))))))))))..))))))).--- ( -31.30, z-score = -1.83, R) >droSim1.chrX 14907004 109 + 17042790 CCAUUAGGCAGGCAAGCAG-----CAACAACGCUUGCCAAUCUGCCAUCGAACU-CCAUUCAUGGAGCUAUUUCUGGUGCAAAGGGUUCAAAGGAAUUUCAUUAGACAUAGCUUG--- ((((..(((((((((((..-----.......)))))))....))))...(((..-...)))))))((((((.(((((((....((((((....))))))))))))).))))))..--- ( -34.80, z-score = -2.80, R) >consensus CCAUUAGGCAGGCAAGCAG_____CAACAACGCUUGCCAAUCUGCCAUCGAACU_CCAUUCAUUGAGCUAUUUCUGGUGUAA_GGGUUCAAAGGAAUUUCAUUAGACAUAGCUUG___ ......(((((((((((..............)))))))....))))..................(((((((.(((((((....((((((....))))))))))))).))))))).... (-15.60 = -18.36 + 2.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:00:22 2011