| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,283,711 – 19,283,774 |
| Length | 63 |
| Max. P | 0.662280 |
| Location | 19,283,711 – 19,283,774 |
|---|---|
| Length | 63 |
| Sequences | 6 |
| Columns | 67 |
| Reading direction | forward |
| Mean pairwise identity | 81.94 |
| Shannon entropy | 0.33764 |
| G+C content | 0.32978 |
| Mean single sequence MFE | -12.68 |
| Consensus MFE | -7.17 |
| Energy contribution | -7.28 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.662280 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19283711 63 + 22422827 AAUAACAAACAGCGGACGCAAAAAUUGACACCAAUUUGCGGACAUAAUUGUUUUUU-GCUUCAU--- ..........(((((((((((..((((....)))))))))((((....)))).)))-)))....--- ( -12.10, z-score = -1.78, R) >droWil1.scaffold_181150 1602362 67 - 4952429 AGUAAAAUGAAGUUGCCAUAAAAAUUGACAGCAAUUUUUGUUUGGACUUUAUUCUUACUGUUAUUAU ((((((((((((((...((((((((((....))))))))))...))))))))).)))))........ ( -17.00, z-score = -3.71, R) >droSec1.super_8 1575771 63 + 3762037 AAUAACAAACAGCGGACGCAAAAAUUGACACCAAUUUGCGGACAUAAUUGUUUUUU-GCUUCAU--- ..........(((((((((((..((((....)))))))))((((....)))).)))-)))....--- ( -12.10, z-score = -1.78, R) >droSim1.chrX 14904743 63 + 17042790 AAUAACAAACAGCGGACGCAAAAAUUGACACCAAUUUGCGGACAUAAUUGUUUUUU-GCUUCAU--- ..........(((((((((((..((((....)))))))))((((....)))).)))-)))....--- ( -12.10, z-score = -1.78, R) >droEre2.scaffold_4690 9534613 63 + 18748788 AAUAACAAACAGCGGACGCAAGAAUUGACACCAAUUUGCGGACAUAAUUGUUUAUU-GUUUCUU--- (((((.((((((.(..(((((..((((....)))))))))..)....)))))).))-)))....--- ( -12.40, z-score = -1.97, R) >droYak2.chrX 9725448 64 - 21770863 AAUAACAAACAGCGGACGCAAAAAUUGACACCAAUUUGCGGACAUAAUUGUUUUUUUGUUUCUU--- (((((.((((((.(..(((((..((((....)))))))))..)....))))))..)))))....--- ( -10.40, z-score = -0.89, R) >consensus AAUAACAAACAGCGGACGCAAAAAUUGACACCAAUUUGCGGACAUAAUUGUUUUUU_GCUUCAU___ ......((((((.(..(((((..((((....)))))))))..)....)))))).............. ( -7.17 = -7.28 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:00:21 2011