| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,282,579 – 19,282,699 |
| Length | 120 |
| Max. P | 0.765959 |
| Location | 19,282,579 – 19,282,699 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 96.83 |
| Shannon entropy | 0.05435 |
| G+C content | 0.42833 |
| Mean single sequence MFE | -31.17 |
| Consensus MFE | -28.60 |
| Energy contribution | -29.00 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.765959 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19282579 120 + 22422827 AAAUUGUGUUUUCGCACCGGGCUUUUUCCGCCUGCACUUUUUCCACACUUUUCUGACAAUUUUCACGCGGAAAGUCAUUUCGAGUCGAUGUCAGCAAAAGUGAAUUCCGCUGAAAAACUG ........(((((((..(((((.......)))))...........(((((((((((((....((((.(((((.....))))).)).)))))))).)))))))......)).))))).... ( -30.80, z-score = -1.65, R) >droYak2.chrX 9724347 120 - 21770863 AAAUUGUGUUUUCGCAUCGGGCUUUUUCCGCCUGCAGUUUUUCCACACUUUUCUGACAAUUUUCACGCGGAAAGUCAUUUCGCGUUGAUGUCAGCAAAAGUGAAUUCUGCUGAAAAACUG ....((((....)))).(((((.......)))))((((((((((((((((((((((((....((((((((((.....))))))).))))))))).))))))).....))..))))))))) ( -39.30, z-score = -3.94, R) >droEre2.scaffold_4690 9533613 120 + 18748788 AAAUUGUGUUUUCGCAUCGCGCUUUUUCCGCCUGCACUUUUUCCGCACUUUUCUGACAAUUUUCACGCGGAAAGUCAUUUCGAGUUGAUGUCAGCAAAAGUGAAUUCUGCUGAAAAACUG ........((((((((..(((.......))).)))..........(((((((((((((....((((.(((((.....))))).).))))))))).))))))).........))))).... ( -27.20, z-score = -0.33, R) >droSim1.chrX 14903636 120 + 17042790 AAAUUGUGUUUUCGCACCGGGCUUUUUCCGCCUGCACUUUUUCCACACUUUUCUGACAAUUUUCACGCGGAAAGUCAUUUCGAGUCGAUGUCAGCAAAAGUGAAUUCCGCUGAAAAACUG ........(((((((..(((((.......)))))...........(((((((((((((....((((.(((((.....))))).)).)))))))).)))))))......)).))))).... ( -30.80, z-score = -1.65, R) >droSec1.super_8 1574637 120 + 3762037 AAAUUGUGUUUUCGCACCGGGCUUUUUCCGCCUGCACUUUUUCCACACUUUUCUGACAAUUUUCACGCGGAAAGUCAUUUCGAGUCGAUGUCAGCACAAGUGAAUUCCGCUGAAAAACUG ....((((.........(((((.......))))).........))))............((((((.((((((..((((((.(.((.(....).)).))))))).)))))))))))).... ( -27.77, z-score = -0.74, R) >consensus AAAUUGUGUUUUCGCACCGGGCUUUUUCCGCCUGCACUUUUUCCACACUUUUCUGACAAUUUUCACGCGGAAAGUCAUUUCGAGUCGAUGUCAGCAAAAGUGAAUUCCGCUGAAAAACUG ........(((((((..(((((.......)))))...........(((((((((((((....((((.(((((.....))))).)).)))))))).)))))))......)).))))).... (-28.60 = -29.00 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:00:20 2011