| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,280,133 – 19,280,235 |
| Length | 102 |
| Max. P | 0.577981 |
| Location | 19,280,133 – 19,280,235 |
|---|---|
| Length | 102 |
| Sequences | 4 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 90.33 |
| Shannon entropy | 0.15917 |
| G+C content | 0.57477 |
| Mean single sequence MFE | -26.98 |
| Consensus MFE | -24.70 |
| Energy contribution | -24.95 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.10 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.577981 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19280133 102 + 22422827 GGCGCAUCCAUAUGCACACCCAUCAUCCUCGACGCCAUUCGAGAGCUCCAUCCGUUCGCCACAUGUGCACCGCACCACCGAGACCUUGGAUGGAUGGAAGAA .((((((....))))............(((((......))))).))(((((((((.........((((...))))..((((....))))))))))))).... ( -29.60, z-score = -1.18, R) >droEre2.scaffold_4690 9531123 93 + 18748788 GCCACAUCCAUAUGCACACCCAUCAUCCUCGACGCCAUUCGAGAGCUCCAUCCGCCCGCCACAUGUGCA-----CCACCGAGACCUUGGAUGGAAGAA---- ......(((((.((((((.........(((((......))))).((.......))........))))))-----...((((....)))))))))....---- ( -22.00, z-score = -1.62, R) >droSim1.chrX 14901159 100 + 17042790 --CACAUCCAUAUGCACAGCCAUCAUCCUCGACGCCAUUCGAGAGCUCCAUCCGUCCGCCACAUGUGCAGGGCACCACCGAGACCUUGGAUGGAUGGAAGAA --....................((...(((((......)))))...((((((((((((((....).)).((......))........))))))))))).)). ( -29.70, z-score = -0.94, R) >droSec1.super_8 1572141 100 + 3762037 --CACAUCCAUAUGCACAGCCAUCAUCCUCGACGCCAUUCGAGAGCUCCAUCCGUCCGCCACAUGUGCAGCGCACCACCGAGACCUUGGAUGGAUGGAAGAA --....................((...(((((......)))))...(((((((((((.......((((...))))....(....)..))))))))))).)). ( -26.60, z-score = -0.68, R) >consensus __CACAUCCAUAUGCACACCCAUCAUCCUCGACGCCAUUCGAGAGCUCCAUCCGUCCGCCACAUGUGCAGCGCACCACCGAGACCUUGGAUGGAUGGAAGAA ....(((((((.((((((.........(((((......))))).((...........))....))))))........((((....)))))))))))...... (-24.70 = -24.95 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:00:19 2011