Locus 15482

Sequence ID dm3.chrX
Location 19,270,965 – 19,271,085
Length 120
Max. P 0.700716
window21345

overview

Window 5

Location 19,270,965 – 19,271,085
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 82.96
Shannon entropy 0.23859
G+C content 0.36869
Mean single sequence MFE -17.90
Consensus MFE -12.89
Energy contribution -12.57
Covariance contribution -0.33
Combinations/Pair 1.16
Mean z-score -1.92
Structure conservation index 0.72
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.45
SVM RNA-class probability 0.700716
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chrX 19270965 120 - 22422827
UUUAAUUAGUUUAUAUAUUUUACUAAUUCCCACAUCUUAUACACAUAUACACAUACACGGCUCGAAUAAUCCAACACGAGAUACCCAGAUUCAUUUGCGAUCUGCUGUUUUCACUGCUGC
...(((((((..(.....)..))))))).............................((((..((....))......((((....((((((.......))))))....))))...)))). ( -12.50, z-score =  -0.10, R)
>droSec1.super_8 1563320 118 - 3762037
UUUAAUUAGUUUAUAUAUUUUACUAAUUCCCACAUCUUA-ACACAUGCACACACACAGGGCUCGAAUAAUACAACUCGAGCUA-CCAGAUCCAUUUUCGAUCUGCUGUUUUCACUGCUGC
...(((((((..(.....)..)))))))...........-...((.(((.....(((((((((((..........))))))).-.((((((.......))))))))))......))))). ( -23.50, z-score =  -3.84, R)
>droYak2.chrX 9712414 107 + 21770863
UUUAAUUAGUUUGUAUAUUUUACUGAUUCGCAUAUCUUA---------ACACAUCUCCUGCUCGAAUAAUCCAACCCGAGCUG-CCAGAUCCAUUUUCGAUCUGCUGUUUUCACUGC---
...(((((((..(.....)..))))))).(((......(---------(((........(((((............))))).(-(.(((((.......))))))))))).....)))--- ( -17.70, z-score =  -1.80, R)
>consensus
UUUAAUUAGUUUAUAUAUUUUACUAAUUCCCACAUCUUA_ACACAU__ACACAUACACGGCUCGAAUAAUCCAACACGAGCUA_CCAGAUCCAUUUUCGAUCUGCUGUUUUCACUGCUGC
...(((((((..(.....)..)))))))...............................(((((............)))))....((((((.......))))))................ (-12.89 = -12.57 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:00:17 2011