| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,260,634 – 19,260,768 |
| Length | 134 |
| Max. P | 0.928381 |
| Location | 19,260,634 – 19,260,768 |
|---|---|
| Length | 134 |
| Sequences | 5 |
| Columns | 150 |
| Reading direction | reverse |
| Mean pairwise identity | 73.81 |
| Shannon entropy | 0.43252 |
| G+C content | 0.31710 |
| Mean single sequence MFE | -27.95 |
| Consensus MFE | -11.94 |
| Energy contribution | -13.42 |
| Covariance contribution | 1.48 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.59 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.34 |
| SVM RNA-class probability | 0.928381 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19260634 134 - 22422827 AAAUAUAUACCAUAAUAUACUGUAGUUGAGUUGAUAAAGUUAAUUCCACUAUGCAUAGUGUGCAACGAAACCACCA-CAAAUAUCGAAAUCAAUCUUUCACAUAU-AAGAAAAAUGAAUGCAAAUACCUUUGCUGU-------------- ...(((((......)))))..(((((.((((((((...)))))))).)))))(((.((..((((.(((........-......)))...(((...((((......-..))))..))).)))).....)).)))...-------------- ( -18.24, z-score = -0.25, R) >droSim1.chrX 14885553 134 - 17042790 -------AACAACACCACA-UAUAGUUGAGUUGAUAAAGUUAAUUCAACUAUGCAUAGUGGGCAACGAACCCAACACCAAAUAUCGAAAUCAAUCUUUCAGAUAU-AAAGGAAAAGAAAGCAAAUACCUUUUCAGAGCUAUGU------- -------............-.((((((((((((((...))))))))))))))((((((((((.......)))........(((((((((......)))).)))))-....((((((...........))))))...)))))))------- ( -31.10, z-score = -4.24, R) >droSec1.super_8 1553233 133 - 3762037 -------AACAACACCACA-UAUAGUUGAGUUGAUAAAGUUAAUUCAACUAUGCAUAGUGGGCAACGAACCCACCA-CAAAUAUCGAAAUCAAUCUUUCAGAUAU-AAAGGAAAAGAAAGCAAAUACCUUUUCAGAGGUAUGU------- -------.......((...-(((((((((((((((...)))))))))))))))....(((((.......)))))..-...(((((((((......)))).)))))-...))............(((((((....)))))))..------- ( -33.60, z-score = -4.80, R) >droYak2.chrX 9701903 141 + 21770863 ----AAAUAU-AUAAUUUAAU-CAGCUUUGCUAGUUAAGUUGAUUCAACUAUGCAUAGUGGGCAA-AAACCCACUA-CAAAUAUCGAUAUUAAUCUUUUAGACAC-AAAGAAAACGAAAGCAAAUAGUUUUUCAGAGUUAUGUGCGCUGC ----...(((-((((((((((-((((((........))))))))).((((((((.(((((((...-...)))))))-................(((((.......-)))))........)))..))))).....))))))))))...... ( -30.60, z-score = -2.17, R) >droEre2.scaffold_4690 9512636 133 - 18748788 ----ACAUAU-AUAAUUUAAU-CAGCUUUGCUAGUGAACUUGAUUCAACUAUGCAUAGUGGGCAA-AAUCCCACUG-CAAAUAUCGAAAUUAAUCUUUUAGAUACAAAAGAAAAGGUAAGCAAAAAGUUGUUCAGAGUUAU--------- ----......-(((((((...-((((((((((..((((.....))))(((.((((..(((((...-...)))))))-))..............((((((......))))))...))).))))..))))))....)))))))--------- ( -26.20, z-score = -1.50, R) >consensus ____A_AUAC_AUAAUAUA_U_UAGUUGAGUUGAUAAAGUUAAUUCAACUAUGCAUAGUGGGCAACGAACCCACCA_CAAAUAUCGAAAUCAAUCUUUCAGAUAU_AAAGAAAAAGAAAGCAAAUACCUUUUCAGAGUUAUGU_______ .......................(((((((((((.....))))))))))).(((...(((((.......)))))...................(((((........)))))........)))............................ (-11.94 = -13.42 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:00:14 2011