Locus 15478

Sequence ID	dm3.chrX
Location	19,256,815 – 19,256,932
Length	117
Max. P	0.973892

overview

Window 0

Location	19,256,815 – 19,256,932
Length	117
Sequences	3
Columns	119
Reading direction	forward
Mean pairwise identity	74.22
Shannon entropy	0.35983
G+C content	0.41303
Mean single sequence MFE	-35.37
Consensus MFE	-15.67
Energy contribution	-16.57
Covariance contribution	0.90
Combinations/Pair	1.19
Mean z-score	-3.22
Structure conservation index	0.44
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	1.90
SVM RNA-class probability	0.973892
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chrX 19256815 117 + 22422827
GAGUUCGAAUGCGCGCUGAAAAGCGACUUUUUCACCUGCUACCUGCUACUUGUUGACUGAAAACGGUUAAUUGUAGUGGGAGUGGCUGAGAAGCACAUA--AUGUUACAUAUUUUUAUA
.........(((.((((....))))...((((((.(..((.((..((((..((((((((....)))))))).))))..))))..).)))))))))....--.................. ( -38.50, z-score =  -4.01, R)
>droYak2.chrX 9697948 111 - 21770863
GAGUUCGAAUGUGCGCGAAAAAGCGCCUUUUGC-------ACCUGCUACUGGAGAACUGAAAAUGGUUAAUUGUAGUGGGUGUGUUGGAAAAAAACAUACCAUGUUAUGUGCAUAUGU-
........(((((((((........((...(((-------(((..((((.....((((......))))....))))..))))))..)).....(((((...))))).)))))))))..- ( -32.90, z-score =  -2.76, R)
>droSim1.chrX 14881266 111 + 17042790
GAGUUCGAAUGCGCGCUGAAAAGCAACGUUUCC-CAUGCUACCUACUACUUGUUGACAGAAAACGGUUAAUUGUAGUGGUAGUG-UUGAGAAGCACAUU--AUGUUGCAUCUUUU----
......((.((((((((....)))...((((((-.((((((((.(((((..((((((........)))))).))))))))))))-).).))))).....--..).))))))....---- ( -34.70, z-score =  -2.90, R)
>consensus
GAGUUCGAAUGCGCGCUGAAAAGCGACUUUUCC_C_UGCUACCUGCUACUUGUUGACUGAAAACGGUUAAUUGUAGUGGGAGUG_UUGAGAAGCACAUA__AUGUUACAUAUUUUU_U_
...(((((...(((((......)).................((((((((..((((((((....)))))))).)))))))).))).)))))............................. (-15.67 = -16.57 +   0.90)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:00:12 2011