| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,256,682 – 19,256,775 |
| Length | 93 |
| Max. P | 0.788524 |
| Location | 19,256,682 – 19,256,775 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 88.11 |
| Shannon entropy | 0.19178 |
| G+C content | 0.39532 |
| Mean single sequence MFE | -24.25 |
| Consensus MFE | -21.40 |
| Energy contribution | -21.53 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.788524 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19256682 93 - 22422827 GCACUCACAGUUGUUGAGAGGACUUCUUUCGGUAAUGUAGCGAGUGCCAAGCCCUAAUUAGAACACUAAGUAUUUGGGGUUAUUUUUUUUUUU---- ((((((.(.((((..(((((.....)))))..))))...).))))))..((((((((((((....))))....))))))))............---- ( -27.40, z-score = -2.90, R) >droEre2.scaffold_4690 9508652 94 - 18748788 GCACUCACAGUUGUAGGAGGCACUUCUUUCGGUAAUGUUGCGAAUGGAAAGCCCUAAUUAGAACACUAGGUAUUUGGGCUCCCUAUUUUUUUUU--- (((...(((.(((..(((((.....)))))..)))))))))((((((..(((((...((((....))))......)))))..))))))......--- ( -20.20, z-score = 0.21, R) >droSec1.super_8 1549293 97 - 3762037 GCACUCACAGUUGUUGAGGGGACUUCUUUCGGUAAUGUAGCGAGUGCCAAGCCCUGAUUAGAACACUAAGUAUUUGGGUUUUUUUUUUUUUUUUUUU ((((((.(.((((..(((((.....)))))..))))...).)))))).((((((...((((....))))......))))))................ ( -24.70, z-score = -1.75, R) >droSim1.chrX 14881133 93 - 17042790 GCACUCACAGUUGUUGAGGGGACUUCUUUCGGUAAUGUAGCGAGUGCCAAGCCCUAAUUAGAACACUAAGUAUUUGGGUUUUUUUUUUGUUUU---- ((((((.(.((((..(((((.....)))))..))))...).)))))).((((((...((((....))))......))))))............---- ( -24.70, z-score = -1.63, R) >consensus GCACUCACAGUUGUUGAGGGGACUUCUUUCGGUAAUGUAGCGAGUGCCAAGCCCUAAUUAGAACACUAAGUAUUUGGGUUUUUUUUUUUUUUU____ ((((((.(.((((..(((((.....)))))..))))...).)))))).((((((...((((....))))......))))))................ (-21.40 = -21.53 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:00:11 2011