| Sequence ID | dm3.chrX |
|---|---|
| Location | 19,253,369 – 19,253,478 |
| Length | 109 |
| Max. P | 0.555986 |
| Location | 19,253,369 – 19,253,478 |
|---|---|
| Length | 109 |
| Sequences | 4 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 82.25 |
| Shannon entropy | 0.27382 |
| G+C content | 0.44586 |
| Mean single sequence MFE | -18.40 |
| Consensus MFE | -13.40 |
| Energy contribution | -13.65 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.555986 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chrX 19253369 109 - 22422827 ACCAACCAACCACAGGCAAUCCUUCAUCUGCAACACAGCAGCAGCCUGGUCUGGUGGUUU-AACUUCGGUUUUCUCAGCAUCUUUCUUC-------UUUUUCCCCUCAGUUUUUUUU ((((.(((..(.(((((..........((((......))))..))))))..)))))))..-(((....)))..................-------..................... ( -20.80, z-score = -1.58, R) >droEre2.scaffold_4690 9505254 97 - 18748788 --------ACCACAGGCAAUCCUUCAUCUGCAACACAGCAGC--CUCGG--UGGUGGUUUAAACUUCGGUUUUCUCAGCAUCUUUCUUC-------UUUUUCCCC-CAGCUCUUUUU --------......(((..........((((......)))).--...((--((.(((...((((....))))..))).)))).......-------.........-..)))...... ( -18.20, z-score = -1.39, R) >droYak2.chrX 9694279 94 + 21770863 -----ACAACCACAGGCAAUCCUUCAUCUGCAACACAGCAG----------UGGUGGUUUAAACUUCGGUUUUCUCAGCAUCUUUCUUCU------UUUUCCCCCAUAGCUUUUU-- -----..(((((((((....))).((.((((......))))----------)))))))).((((....))))..................------...................-- ( -16.50, z-score = -1.82, R) >droSim1.chrX 14877985 108 - 17042790 --------ACCACAGGCAAUCCUUCAUCUGCAACACAGCAGCAGCCUGU-CUGGUGGUUUAAACUUCGGUUUUCUCAGCAUCUUUCUUCUUUCUUCUUUUUCCCCUCAGCUUUUUUC --------...((((((..........((((......))))..))))))-.((.(((...((((....))))..))).))..................................... ( -18.10, z-score = -1.45, R) >consensus ________ACCACAGGCAAUCCUUCAUCUGCAACACAGCAGC__CCUGG__UGGUGGUUUAAACUUCGGUUUUCUCAGCAUCUUUCUUC_______UUUUUCCCCUCAGCUUUUUUU ........((((((((....)))....((((......))))............)))))..((((....))))............................................. (-13.40 = -13.65 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 02:00:10 2011